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[185618_at]

Description Y49F6A.5 /REP_DB=WormBase Gene ID /WP=CE24394 /TR=Q9N3L6 /GB=AAF60726.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 33.9
(1.6)
A 		37.1
(2.1)
A 		43.1
(3)
A 		3.3
(-3)
A 		40
B 22.7
(-1.6)
A 		54.3
(3)
A 		26
(-1.1)
A 		12.9
(-3)
A 		41
C 47.5
(2.1)
A 		13.8
(-1.9)
A 		5
(-3)
A 		54.8
(3)
A 		50
avr 34.7
(2.8) 		35.1
(3) 		24.7
(-2.5) 		23.7
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 55.4
(3)
A 		37.7
(0.9)
A 		29.6
(-0)
A 		10.2
(-2.3)
A 		35.7
(0.7)
A 		4.5
(-3)
A 		51
B 72.5
(3)
A 		43.1
(0.3)
A 		19.6
(-1.9)
A 		14.8
(-2.3)
A 		37.4
(-0.2)
A 		7.4
(-3)
A 		65
C 36.8
(-0.6)
A 		15.2
(-3)
A 		69.5
(3)
A 		35.2
(-0.8)
A 		18.2
(-2.7)
A 		20.4
(-2.4)
A 		54
avr 54.9
(3) 		32
(-0.1) 		39.6
(0.9) 		20.1
(-1.7) 		30.4
(-0.3) 		10.8
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 12.3
(3)
A 		8.1
(0.9)
A 		11.3
(2.5)
A 		0.5
(-3)
A 		12
B 7.2
(-0.5)
A 		13.4
(3)
A 		6
(-1.1)
A 		2.7
(-3)
A 		11
C 15.7
(3)
A 		4
(-2)
A 		1.7
(-3)
A 		9.2
(0.2)
A 		14
avr 11.7
(3) 		8.5
(0.5) 		6.3
(-1.3) 		4.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.2
(1.4)
A 		13.4
(3)
A 		6.4
(-0.4)
A 		2.6
(-2.3)
A 		10.8
(1.7)
A 		1.1
(-3)
A 		12
B 25.2
(3)
A 		14.3
(0.1)
A 		4.8
(-2.4)
A 		3.9
(-2.7)
A 		15.2
(0.3)
A 		2.7
(-3)
A 		23
C 13.6
(1.1)
A 		4.6
(-3)
A 		17.7
(3)
A 		7.1
(-1.9)
A 		5.9
(-2.4)
A 		6.8
(-2)
A 		13
avr 16.3
(3) 		10.8
(0.4) 		9.6
(-0.1) 		4.5
(-2.5) 		10.6
(0.3) 		3.5
(-3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185618_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5337
Sequence Type Exemplar sequence
Representative Public ID Y49F6A.5 NCBI
Target Description Y49F6A.5 /REP_DB=WormBase Gene ID /WP=CE24394 /TR=Q9N3L6 /GB=AAF60726.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062193 NCBI Caenorhabditis elegans Y49F6A.5 (Y49F6A.5) mRNA, complete cds. 11/11 None
SNAP00000032335 ENSEMBL cdna:SNAP chromosome:CEL140:II:3603193:3609855:-1 9/11 None
GENEFINDER00000032340 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3608324:3609855:-1 9/11 None
Y49F6A.5 ENSEMBL cdna:known chromosome:CEL140:II:3607931:3609855:-1 gene:Y49F6A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3607929-3609854(-) 95.04 100.0
Public Domain and Genome References
Gene Title
Ensembl Y49F6A.5
Entrez Gene 190077 Entrez gene
SwissProt Q9N3L6 EMBL-EBI
WormBase CE24394 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60726 Hypothetical protein Y49F6A.5 [Caenorhabditis elegans] ref|NP_494594.1| Y49F6A.5 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185618_AT
gaccggaagactatccgactttccatgttgcatgccaaatttggactgggaaatatgcta
ccgggatctttaaaaacgatgtttttgatttccggaattatctgttcaacccattctcgg
tggatcactcgattccccagatcgtgattcaatcgaaatcggactcattctacatgaacc
aaatgaaaaagtctcatggaccggattacccaaaatggtccaaactctcgaaggacgcca
agaagcaatggagcacctggcgtagtcagatgtacgaggtgcagaagcgtcagatcactg
acaagttgatcgtgtaccggtcggtttgggagaagatgcatggtgtggagaaaccgggac
ggagatgtcctatgactttggtcaaggtggaaattgacgatgcggagtatccgggggagg
gtcctgacatgatctctcaacattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCGGAAGACTATCCGACTTTCCA 134 383 656 Antisense
TCCGACTTTCCATGTTGCATGCCAA 617 595 669 Antisense
TTTCCGGAATTATCTGTTCAACCCA 472 669 744 Antisense
GTTCAACCCATTCTCGGTGGATCAC 303 445 759 Antisense
ATCACTCGATTCCCCAGATCGTGAT 417 27 779 Antisense
AATCGAAATCGGACTCATTCTACAT 71 169 806 Antisense
AAGTCTCATGGACCGGATTACCCAA 3 155 844 Antisense
AGCAATGGAGCACCTGGCGTAGTCA 626 75 899 Antisense
CAAGTTGATCGTGTACCGGTCGGTT 657 183 957 Antisense
TATCCGGGGGAGGGTCCTGACATGA 243 625 1063 Antisense
GTCCTGACATGATCTCTCAACATTT 583 475 1076 Antisense
Sequence Source Affymetrix Proprietary Database