[Home] | [Total List]

[185617_at]

Description Y51H7C.8 /REP_DB=WormBase Gene ID /WP=CE22362 /TR=Q9N3J5 /GB=AAK39332.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 88      4grp_total > 03      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 114
1 2 3 4 range
A 18.9
(0.5)
A 		2.4
(-2.9)
A 		1.7
(-3)
A 		31.6
(3)
A 		30
B 7.4
(2.9)
A 		7.5
(3)
A 		2.2
(-3)
A 		4.3
(-0.6)
A 		5
C 5.5
(-2.8)
A 		2.3
(-3)
A 		1.6
(-3)
A 		115.9
(3)
A 		114
avr 10.6
(-1.9) 		4.1
(-2.7) 		1.8
(-3) 		50.6
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 2.4
(-3)
A 		22
(-0.8)
A 		50.8
(2.3)
A 		2.5
(-3)
A 		36.7
(0.8)
A 		57
(3)
A 		55
B 34.3
(1.5)
A 		5.7
(-2.5)
A 		24.6
(0.1)
A 		2.1
(-3)
A 		33.5
(1.4)
A 		45.4
(3)
A 		43
C 2.3
(-3)
A 		5.9
(-2.7)
A 		3.5
(-2.9)
A 		2.9
(-3)
A 		35.9
(-0.3)
A 		77.9
(3)
P 		76
avr 13
(-1.9) 		11.2
(-2.1) 		26.3
(-0.5) 		2.5
(-3) 		35.4
(0.4) 		60.1
(3) 		58
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 6.9
(3)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		4.6
(0.9)
A 		7
B 2.4
(3)
A 		1.8
(1.1)
A 		0.5
(-3)
A 		0.9
(-1.7)
A 		2
C 1.8
(-2.6)
A 		0.7
(-2.9)
A 		0.5
(-3)
A 		19.5
(3)
A 		19
avr 3.7
(-0.5) 		1
(-2.6) 		0.5
(-3) 		8.3
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 0.4
(-3)
A 		7.8
(0.3)
A 		11.1
(1.8)
A 		0.6
(-2.9)
A 		11.1
(1.8)
A 		13.9
(3)
A 		14
B 11.9
(1.2)
A 		1.9
(-2.5)
A 		6
(-1)
A 		0.5
(-3)
A 		13.6
(1.8)
A 		16.9
(3)
A 		16
C 0.8
(-3)
A 		1.8
(-2.7)
A 		0.9
(-2.9)
A 		0.6
(-3)
A 		11.6
(-0.4)
A 		26.1
(3)
P 		26
avr 4.4
(-1.8) 		3.8
(-2) 		6
(-1.2) 		0.6
(-3) 		12.1
(0.8) 		19
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4644
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.8 NCBI
Target Description Y51H7C.8 /REP_DB=WormBase Gene ID /WP=CE22362 /TR=Q9N3J5 /GB=AAK39332.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061563 NCBI Caenorhabditis elegans Y51H7C.8 (Y51H7C.8) mRNA, complete cds. 11/11 None
SNAP00000035523 ENSEMBL cdna:SNAP chromosome:CEL140:II:1401834:1402111:1 11/11 None
Y51H7C.8 ENSEMBL cdna:known chromosome:CEL140:II:1401834:1402111:1 gene:Y51H7C.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1401832-1402110(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.8
Entrez Gene 190177 Entrez gene
SwissProt Q9N3J5 EMBL-EBI
WormBase CE22362 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39332 Hypothetical protein Y51H7C.8 [Caenorhabditis elegans] ref|NP_493964.1| Y51H7C.8 [Caenorhabditis elegans] 3.0E-34
Sequence
Target Sequence 
>C. ELEGANS:185617_AT
tgagcttgctggtccaatatgacgaattgctcggactctgtgatggccaaatccagagaa
aattgaacaatattgtgttgtgttcgatcggcaaaatgaacgaaaagatgggtcttcggc
gtcgagtcatggtgcaatcggtggtcgaaaaagtgatcaaatatgagaacggcgggcacg
agcagat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCTTGCTGGTCCAATATGACGA 663 565 14 Antisense
CCAATATGACGAATTGCTCGGACTC 647 277 27 Antisense
CTCGGACTCTGTGATGGCCAAATCC 409 231 43 Antisense
GGACTCTGTGATGGCCAAATCCAGA 647 523 46 Antisense
TATTGTGTTGTGTTCGATCGGCAAA 623 663 84 Antisense
GTGTTGTGTTCGATCGGCAAAATGA 147 485 88 Antisense
AAAAGATGGGTCTTCGGCGTCGAGT 255 129 116 Antisense
GAGTCATGGTGCAATCGGTGGTCGA 370 399 137 Antisense
GGTGCAATCGGTGGTCGAAAAAGTG 674 499 144 Antisense
GATCAAATATGAGAACGGCGGGCAC 702 367 168 Antisense
ATGAGAACGGCGGGCACGAGCAGAT 139 45 176 Antisense
Sequence Source Affymetrix Proprietary Database