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[185616_at]

Description F55A12.1 /REP_DB=WormBase Gene ID /WP=CE11117 /TR=P91085 /GB=AAB54129.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 29      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 125.6
(3)
P 		81.6
(-1.5)
A 		67
(-3)
M 		103.6
(0.7)
A 		59
B 95.7
(0.3)
P 		128.6
(3)
A 		56.1
(-3)
A 		90.4
(-0.2)
P 		73
C 112.6
(0.6)
P 		88
(-3)
A 		128.7
(3)
P 		122
(2)
M 		41
avr 111.3
(3) 		99.4
(0.4) 		83.9
(-3) 		105.3
(1.7) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 559
1 2 3 4 5 6 range
A 100.1
(-2.6)
A 		71.7
(-2.9)
A 		61.4
(-3)
P 		162.7
(-1.9)
P 		239.4
(-1.1)
P 		617.2
(3)
P 		556
B 70.4
(-2.8)
A 		58
(-3)
A 		58.3
(-3)
A 		159.3
(-1.1)
P 		253
(0.6)
P 		383.5
(3)
P 		326
C 64.5
(-3)
P 		84.7
(-2.7)
A 		128.3
(-2)
P 		154
(-1.6)
A 		320.9
(0.9)
P 		455.5
(3)
P 		391
avr 78.3
(-2.9) 		71.5
(-3) 		82.7
(-2.8) 		158.7
(-1.7) 		271.1
(-0.1) 		485.4
(3) 		414
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 45.7
(3)
P 		17.7
(-2.5)
A 		17.5
(-2.5)
M 		15.2
(-3)
A 		31
B 30.5
(2.6)
P 		31.8
(3)
A 		13
(-3)
A 		19.3
(-1)
P 		19
C 37.3
(1.1)
P 		25.3
(-1.8)
A 		44.9
(3)
P 		20.6
(-3)
M 		24
avr 37.8
(3) 		24.9
(-1) 		25.1
(-0.9) 		18.4
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 18.4
(-2.8)
A 		25.5
(-2.5)
A 		13.4
(-3)
P 		41.3
(-1.8)
P 		72.3
(-0.4)
P 		150.3
(3)
P 		137
B 24.5
(-2.5)
A 		19.3
(-2.8)
A 		14.2
(-3)
A 		42.2
(-1.7)
P 		102.8
(1.1)
P 		143
(3)
P 		129
C 23.9
(-3)
P 		25.8
(-2.9)
A 		32.7
(-2.6)
P 		31
(-2.7)
A 		103.8
(0.7)
P 		152.5
(3)
P 		129
avr 22.3
(-2.9) 		23.5
(-2.8) 		20.1
(-3) 		38.2
(-2.2) 		93
(0.4) 		148.6
(3) 		129
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2031
Sequence Type Exemplar sequence
Representative Public ID F55A12.1 NCBI
Target Description F55A12.1 /REP_DB=WormBase Gene ID /WP=CE11117 /TR=P91085 /GB=AAB54129.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059178(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059178 NCBI Caenorhabditis elegans F55A12.1 (F55A12.1) mRNA, complete cds. 11/11 None
GENEFINDER00000029053 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5368481:5372474:1 11/11 None
SNAP00000029050 ENSEMBL cdna:SNAP chromosome:CEL140:I:5371151:5372474:1 11/11 None
F55A12.1 ENSEMBL cdna:known chromosome:CEL140:I:5368481:5372474:1 gene:F55A12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5368480-5372474(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A12.1
Entrez Gene 186279 Entrez gene
SwissProt P91085 EMBL-EBI
WormBase CE11117 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54129 Hypothetical protein F55A12.1 [Caenorhabditis elegans] ref|NP_491579.1| F55A12.1 [Caenorhabditis elegans] 0.0
blast CAA95839 Hypothetical protein R06C7.1 [Caenorhabditis elegans] ref|NP_492045.1| R06C7.1 [Caenorhabditis elegans] sp|Q21770|GCC7_CAEEL Germ cell expressed protein R06C7.1 0.0
blast CAE66929 Hypothetical protein CBG12321 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 6.3E-51
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003100 EMBL-EBI Argonaute and Dicer protein, PAZ 6.3E-51
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Pfam IPR003165 EMBL-EBI Stem cell self-renewal protein Piwi 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:185616_AT
gcttatgaaatcccactggctcgtgccatcattcatggatactcgaaagatatcaaatta
atttacatcgtcgtcactaaggagcataactatcgcttcttccgtgatcagcttcgttcg
ggcgggaaggcgactgaaatgaatattccacctggtattgtcttggataacgccgtcacg
aatccagcatgcaagcagttcttcctaaacggtcacacgactctccaagggacagcgaag
acaccactgtacaccgttcttgctgacgattgcgcggctccaatggaccgccttgaggag
ctaacattcacactttgtcattaccaccaaattgttgctctgagcacatcgatccccact
ccactttatgtggcgaacgagtatgcaaagcgtggaagagatctctggggggaacgaaca
gtggatggtcctatcgaagctaaggagtcgcatggcgagcgtctcaaggag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTATGAAATCCCACTGGCTCGTG 46 305 2161 Antisense
CACTGGCTCGTGCCATCATTCATGG 233 199 2174 Antisense
AGGAGCATAACTATCGCTTCTTCCG 612 55 2240 Antisense
AATATTCCACCTGGTATTGTCTTGG 78 175 2302 Antisense
TGCAAGCAGTTCTTCCTAAACGGTC 551 575 2350 Antisense
TCACACGACTCTCCAAGGGACAGCG 304 627 2373 Antisense
ACTGTACACCGTTCTTGCTGACGAT 305 95 2406 Antisense
GGACCGCCTTGAGGAGCTAACATTC 374 523 2445 Antisense
CATTCACACTTTGTCATTACCACCA 524 215 2465 Antisense
TTACCACCAAATTGTTGCTCTGAGC 455 681 2481 Antisense
GTCGCATGGCGAGCGTCTCAAGGAG 369 473 2607 Antisense
Sequence Source Affymetrix Proprietary Database