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[185615_at]

Description K02G10.8 /REP_DB=WormBase Gene ID /WP=CE04708 /TR=Q21162 /GB=AAK39254.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 19      4grp_total > 55      6grp_cgc > 01      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 377
1 2 3 4 range
A 579.5
(1.7)
P 		576.6
(1.7)
A 		631.7
(3)
A 		384.7
(-3)
M 		247
B 585.3
(-1.2)
P 		516.6
(-2.9)
A 		512.8
(-3)
M 		761.3
(3)
M 		249
C 751.8
(3)
P 		510.1
(-1.3)
P 		463.8
(-2.1)
P 		415.2
(-3)
A 		337
avr 638.9
(3) 		534.4
(-2.3) 		536.1
(-2.2) 		520.4
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 598
1 2 3 4 5 6 range
A 839.7
(3)
P 		456.6
(-2)
P 		380.5
(-3)
A 		464.9
(-1.9)
A 		544.6
(-0.9)
P 		510.8
(-1.3)
M 		459
B 641
(3)
P 		543.6
(1.1)
M 		430.3
(-1.1)
A 		496.4
(0.2)
P 		500.2
(0.2)
P 		334.5
(-3)
A 		307
C 932.3
(3)
P 		533.6
(-1.4)
A 		523.5
(-1.5)
P 		444.3
(-2.4)
M 		699.6
(0.4)
M 		388.2
(-3)
M 		544
avr 804.3
(3) 		511.3
(-1.5) 		444.8
(-2.5) 		468.5
(-2.1) 		581.5
(-0.4) 		411.2
(-3) 		393
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 211
(3)
P 		125.2
(-0.3)
A 		165.1
(1.2)
A 		56.3
(-3)
M 		155
B 186.6
(3)
P 		127.6
(-2.2)
A 		118.8
(-3)
M 		162.2
(0.8)
M 		68
C 248.9
(3)
P 		146.7
(-0.4)
P 		161.7
(0.1)
P 		70
(-3)
A 		179
avr 215.5
(3) 		133.2
(-1.1) 		148.5
(-0.4) 		96.2
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 154.8
(2.3)
P 		162.4
(2.9)
P 		82.9
(-3)
A 		117.9
(-0.4)
A 		164.4
(3)
P 		124.4
(0.1)
M 		82
B 223
(3)
P 		180.9
(0.9)
M 		104.5
(-3)
A 		131.5
(-1.6)
P 		203.2
(2)
P 		124.7
(-2)
A 		119
C 345.6
(3)
P 		162.8
(-1.3)
A 		133.2
(-2)
P 		89.4
(-3)
M 		226.4
(0.2)
M 		130
(-2)
M 		256
avr 241.1
(3) 		168.7
(-0.2) 		106.9
(-3) 		112.9
(-2.7) 		198
(1.1) 		126.4
(-2.1) 		134
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185615_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16543
Sequence Type Exemplar sequence
Representative Public ID K02G10.8 NCBI
Target Description K02G10.8 /REP_DB=WormBase Gene ID /WP=CE04708 /TR=Q21162 /GB=AAK39254.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076405(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076405 NCBI Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-14) (dnj-14) mRNA, complete cds. 11/11 None
K02G10.8 ENSEMBL cdna:known chromosome:CEL140:X:4709718:4711712:-1 gene:K02G10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000018861 3/11 Cross Hyb Matching Probes None
SNAP00000018859 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4710225-4711708(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol dnj-14
Ensembl K02G10.8
Entrez Gene 180746 Entrez gene
SwissProt Q21162 EMBL-EBI
WormBase CE04708 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.20258.1.S1_S_AT similar to cysteine string protein cfa
DROSOPHILA_2:1636651_A_AT Cysteine string protein dm
DROSGENOME1:141486_AT Cysteine string protein dm
CHICKEN:GGA.12226.2.S1_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 gga
HG-U133B:224611_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133_PLUS_2:224611_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133B:224612_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133_PLUS_2:224612_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133_PLUS_2:224613_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133B:224613_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HU35KSUBB:RC_T33489_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HU35KSUBB:RC_R59906_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HU35KSUBD:RC_AA455474_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
U133_X3P:HS.165563.0.S3_3P_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
U133_X3P:HS.165563.0.S2_3P_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
U133_X3P:HS.165563.0.S1_3P_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U95B:45317_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U95B:57109_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U95D:82410_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
U133_X3P:HS.211440.0.A1_3P_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133_PLUS_2:244601_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U133B:244601_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U95C:63699_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
HG-U95D:84715_AT DnaJ (Hsp40) homolog, subfamily C, member 5 hs
MOUSE430_2:1460498_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430A_2:1460498_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOE430A:1460498_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MU11KSUBB:MSA.21307.0_S_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MG-U74AV2:93211_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MG-U74BV2:109761_G_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MG-U74BV2:114406_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MG-U74BV2:109760_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOE430A:1436180_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430A_2:1436180_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430_2:1436180_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOE430A:1436179_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430A_2:1436179_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430_2:1436179_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOE430A:1448851_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430A_2:1448851_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430_2:1448851_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOE430A:1448850_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430A_2:1448850_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MOUSE430_2:1448850_A_AT DnaJ (Hsp40) homolog, subfamily C, member 5 mm
MG-U74BV2:104774_AT DnaJ (Hsp40) homolog, subfamily C, member 5, mRNA (cDNA clone IMAGE:4975709) mm
MG-U74BV2:114508_AT DnaJ (Hsp40) homolog, subfamily C, member 5, mRNA (cDNA clone IMAGE:4975709) mm
MG-U74CV2:137715_AT DnaJ (Hsp40) homolog, subfamily C, member 5, mRNA (cDNA clone IMAGE:4975709) mm
MU19KSUBA:TC17076_AT DnaJ (Hsp40) homolog, subfamily C, member 5, mRNA (cDNA clone IMAGE:4975709) mm
MU19KSUBC:TC40254_AT DnaJ (Hsp40) homolog, subfamily C, member 5, mRNA (cDNA clone IMAGE:4975709) mm
MU19KSUBC:TC40254_G_AT DnaJ (Hsp40) homolog, subfamily C, member 5, mRNA (cDNA clone IMAGE:4975709) mm
RAE230A:1369813_AT cysteine string protein rn
RAT230_2:1369813_AT cysteine string protein rn
RG-U34A:S81917_S_AT cysteine string protein rn
RG-U34A:U39320_AT cysteine string protein rn
RAE230A:1371666_AT Cysteine string protein rn
RAT230_2:1371666_AT Cysteine string protein rn
RAE230A:1374663_AT Cysteine string protein rn
RAT230_2:1374663_AT Cysteine string protein rn
RAE230B:1384001_AT Cysteine string protein rn
RAT230_2:1384001_AT Cysteine string protein rn
RG-U34A:RC_AA859806_AT Cysteine string protein rn
RG-U34B:RC_AI060251_AT Cysteine string protein rn
Protein Similarities
Method ID Description E-Value
blast AAK39254 Dnaj domain (prokaryotic heat shock protein) protein 14 [Caenorhabditis elegans] ref|NP_508806.1| DNaJ domain (prokaryotic heat shock protein) family member (dnj-14) [Caenorhabditis elegans] 1.0E-107
blast CAE68637 Hypothetical protein CBG14527 [Caenorhabditis briggsae] 7.0E-81
blast AAH74594 DnaJ (Hsp40) homolog, subfamily C, member 5 [Xenopus tropicalis] ref|NP_001005622.1| DnaJ (Hsp40) homolog, subfamily C, member 5 [Xenopus tropicalis] 4.0E-24
Protein Domains
Database ID Description E-Value
scop a.2.3.Chaperone J-domain All alpha proteins; Long alpha-hairpin; Chaperone J-domain; Chaperone J-domain 8.00000015633185E-25
Pfam IPR001623 EMBL-EBI Heat shock protein DnaJ, N-terminal 4.8E-34
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508806.1 1 131-153
K02G10.8 1 131-153
Sequence
Target Sequence 
>C. ELEGANS:185615_AT
acaagtggaggagcatctccccgtgaagaatctccagccgctgatcattcgcacgatccg
aaaaagggacttcatttgtacaatgttctcggcattcagaaaaatgccacagatgacgaa
atcaaaaaagcgtatcgcaaactagccctccgctatcatcccgacaaaaacctagatgga
gatccggaaaaaacggaaatgttcaaagaaatcaactacgcaaatgcagtgctctcaaat
ccaaataaacgtcgtgtctatgacgagatgggagagaccgggctgaaactgatggagcag
tttggagaggatgagaagattctgcagtggatgttgaagccttggttcaaatggacattt
ttcgcgttcggacttctcacgggtggcttcttctgctgctgttgtggttgtatgtgttgt
tgtcaatgctgttgcaatttctgttgtggaaagtacaagccgaagcacgatgatgagttt
gccgatgagacgtcggacggagatgtgattgttgatcaaccgacagcttccgagccaatg
ccagatacgaataacagacaggtgccgattgtgattgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAAGTGGAGGAGCATCTCCCCGTG 597 111 52 Antisense
GAAGAATCTCCAGCCGCTGATCATT 224 341 76 Antisense
CGCTGATCATTCGCACGATCCGAAA 37 255 90 Antisense
AAAAGCGTATCGCAAACTAGCCCTC 119 129 177 Antisense
CGCTATCATCCCGACAAAAACCTAG 84 255 202 Antisense
AATGCAGTGCTCTCAAATCCAAATA 606 165 274 Antisense
GGGAGAGACCGGGCTGAAACTGATG 449 495 321 Antisense
AATGGACATTTTTCGCGTTCGGACT 19 163 401 Antisense
CTTCTGCTGCTGTTGTGGTTGTATG 174 221 441 Antisense
GCTTCCGAGCCAATGCCAGATACGA 667 305 577 Antisense
CAGACAGGTGCCGATTGTGATTGCC 130 205 606 Antisense
Sequence Source Affymetrix Proprietary Database