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[185614_s_at]

Description Y57A10A.9 /REP_DB=WormBase Gene ID /WP=CE22628 /TR=Q9NA77 /GB=CAB55028.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 20      6grp_cgc > 49      6grp_cgc_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 137
1 2 3 4 range
A 28.8
(-3)
A 		29.1
(-3)
A 		64.4
(-0.1)
A 		101.6
(3)
A 		73
B 36.3
(-2.1)
A 		54.4
(-1.3)
A 		16.3
(-3)
A 		151.5
(3)
A 		135
C 107.7
(3)
A 		63.4
(0.2)
A 		14.4
(-3)
A 		17.1
(-2.8)
A 		93
avr 57.6
(-0.3) 		49
(-1.2) 		31.7
(-3) 		90.1
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 159
1 2 3 4 5 6 range
A 19.8
(-3)
A 		28.1
(-2.7)
A 		99.7
(0.3)
A 		26.3
(-2.7)
A 		64.4
(-1.1)
A 		164
(3)
P 		144
B 69.8
(-0.2)
A 		45.5
(-1.3)
A 		8.2
(-2.9)
A 		5.4
(-3)
A 		37.3
(-1.6)
A 		143
(3)
P 		138
C 68.7
(0.1)
A 		10.7
(-3)
A 		15.6
(-2.7)
A 		24
(-2.3)
A 		86.3
(1)
A 		122.9
(3)
M 		112
avr 52.8
(-1.4) 		28.1
(-2.5) 		41.2
(-1.9) 		18.6
(-3) 		62.7
(-0.9) 		143.3
(3) 		125
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 10.5
(-0.6)
A 		6.3
(-3)
A 		16.8
(3)
A 		14.9
(1.9)
A 		11
B 11.6
(-1.4)
A 		13.4
(-1)
A 		3.8
(-3)
A 		32.3
(3)
A 		29
C 35.7
(3)
A 		18.2
(-0.2)
A 		5
(-2.6)
A 		2.9
(-3)
A 		33
avr 19.3
(3) 		12.6
(-0.7) 		8.5
(-3) 		16.7
(1.6) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 3.7
(-3)
A 		10
(-2)
A 		21.7
(-0)
A 		6.7
(-2.5)
A 		19.4
(-0.4)
A 		39.9
(3)
P 		36
B 24.3
(-0.4)
A 		15.2
(-1.4)
A 		2
(-2.9)
A 		1.4
(-3)
A 		15.1
(-1.4)
A 		53.3
(3)
P 		52
C 25.5
(0.5)
A 		3.3
(-3)
A 		4
(-2.9)
A 		4.8
(-2.8)
A 		27.9
(0.9)
A 		41.1
(3)
M 		38
avr 17.8
(-1) 		9.5
(-2.2) 		9.2
(-2.3) 		4.3
(-3) 		20.8
(-0.6) 		44.8
(3) 		41
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185614_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2862
Sequence Type Exemplar sequence
Representative Public ID Y57A10A.9 NCBI
Target Description Y57A10A.9 /REP_DB=WormBase Gene ID /WP=CE22628 /TR=Q9NA77 /GB=CAB55028.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064200 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-276) (tag-276) mRNA, complete cds. 11/11 None
SNAP00000026029 ENSEMBL cdna:SNAP chromosome:CEL140:II:12239853:12248980:-1 11/11 None
GENEFINDER00000026057 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12248224:12248980:-1 11/11 None
Y57A10A.9 ENSEMBL cdna:known chromosome:CEL140:II:12248113:12248987:-1 gene:Y57A10A.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12248220-12248977(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-276
Ensembl Y57A10A.9
Entrez Gene 174865 Entrez gene
SwissProt Q9NA77 EMBL-EBI
WormBase CE22628 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB55028 Hypothetical protein Y57A10A.9 [Caenorhabditis elegans] ref|NP_496601.1| Temporarily Assigned Gene name family member (tag-276) [Caenorhabditis elegans] 1.0E-64
blast CAB55028 Hypothetical protein Y57A10A.9 [Caenorhabditis elegans] ref|NP_496601.1| Temporarily Assigned Gene name family member (tag-276) [Caenorhabditis elegans] 5.0E-64
blast CAB55041 Hypothetical protein Y43F11A.4 [Caenorhabditis elegans] emb|CAB55038.1| Hypothetical protein Y43F11A.1 [Caenorhabditis elegans] ref|NP_496578.1| Y43F11A.4 [Caenorhabditis elegans] ref|NP_496575.1| Y43F11A.1 [Caenorhabditis elegans] 3.0E-11
blast CAB55041 Hypothetical protein Y43F11A.4 [Caenorhabditis elegans] emb|CAB55038.1| Hypothetical protein Y43F11A.1 [Caenorhabditis elegans] ref|NP_496578.1| Y43F11A.4 [Caenorhabditis elegans] ref|NP_496575.1| Y43F11A.1 [Caenorhabditis elegans] 6.0E-11
Sequence
Target Sequence 
>C. ELEGANS:185614_S_AT
tccactgagccctgctcaacaagtcagaaaatacactgactacttgctcaaagagcacaa
ccggtactatgcactggagtgtcttctcttcctcgactgcccgattcgagtattccggga
atgccgtaccgagcaaattgtcaagagccagtatgatggacggtatgagtaccagtaccc
agtcaacttgttgctccagaagcttcgtcgtctcgctgctcaggagttggagcaggatgt
tgtggagcaaaagatgcgggaggcttcgaagaacaaggtgctcttcgccaatgtgctcaa
tat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCACTGAGCCCTGCTCAACAAGTC 281 589 66 Antisense
GAAAATACACTGACTACTTGCTCAA 599 353 92 Antisense
GAGCACAACCGGTACTATGCACTGG 463 389 118 Antisense
TATGCACTGGAGTGTCTTCTCTTCC 528 657 133 Antisense
CGACTGCCCGATTCGAGTATTCCGG 246 249 159 Antisense
GTATTCCGGGAATGCCGTACCGAGC 308 449 175 Antisense
GGACGGTATGAGTACCAGTACCCAG 310 523 223 Antisense
AGTACCCAGTCAACTTGTTGCTCCA 546 59 239 Antisense
TCGTCTCGCTGCTCAGGAGTTGGAG 30 605 273 Antisense
GAGGCTTCGAAGAACAAGGTGCTCT 664 405 325 Antisense
TGCTCTTCGCCAATGTGCTCAATAT 319 581 344 Antisense
Sequence Source Affymetrix Proprietary Database