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[185611_at] 7TM chemoreceptor, sre family

Description C50E10.7 /REP_DB=WormBase Gene ID /WP=CE19761 /TR=Q9TZJ7 /GB=AAC67438.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 18      6grp_cgc > 90      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 3.3
(-3)
A 		25.8
(-1.1)
A 		3.4
(-3)
A 		74
(3)
A 		71
B 1.1
(-3)
A 		7
(-2.1)
A 		14.8
(-0.9)
A 		40.9
(3)
A 		40
C 11
(-0.2)
A 		17.6
(3)
A 		5.2
(-3)
A 		13.8
(1.2)
A 		12
avr 5.1
(-3) 		16.8
(-1.1) 		7.8
(-2.6) 		42.9
(3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 17.3
(-0.6)
A 		4.1
(-3)
A 		37
(3)
A 		11.7
(-1.6)
A 		10.7
(-1.8)
A 		17.1
(-0.6)
A 		33
B 6
(-1.8)
A 		7.3
(-1.5)
A 		2.4
(-2.8)
A 		1.8
(-3)
A 		23.7
(3)
A 		5.4
(-2)
A 		22
C 3.1
(-2.6)
A 		11.8
(3)
A 		3.8
(-2.2)
A 		2.8
(-2.8)
A 		2.5
(-3)
A 		5.3
(-1.2)
A 		9
avr 8.8
(-0.7) 		7.7
(-1.5) 		14.4
(3) 		5.4
(-3) 		12.3
(1.6) 		9.3
(-0.4) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 1.2
(-2.8)
A 		5.6
(-0.2)
A 		0.9
(-3)
A 		10.8
(3)
A 		10
B 0.4
(-3)
A 		1.7
(-2.1)
A 		3.4
(-0.8)
A 		8.7
(3)
A 		8
C 3.7
(0.5)
A 		5.1
(3)
A 		1.8
(-3)
A 		2.3
(-2.1)
A 		3
avr 1.8
(-3) 		4.1
(-0.5) 		2
(-2.8) 		7.3
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3.2
(-1.5)
A 		1.5
(-3)
A 		8.1
(3)
A 		3
(-1.6)
A 		3.2
(-1.5)
A 		4.2
(-0.5)
A 		7
B 2.1
(-1.9)
A 		2.4
(-1.7)
A 		0.6
(-2.9)
A 		0.5
(-3)
A 		9.6
(3)
A 		2
(-2)
A 		9
C 1.2
(-1.8)
A 		3.6
(3)
A 		1
(-2.2)
A 		0.6
(-3)
A 		0.8
(-2.6)
A 		1.8
(-0.6)
A 		3
avr 2.2
(-1.5) 		2.5
(-0.9) 		3.2
(0.5) 		1.4
(-3) 		4.5
(3) 		2.7
(-0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2904
Sequence Type Exemplar sequence
Representative Public ID C50E10.7 NCBI
Target Description C50E10.7 /REP_DB=WormBase Gene ID /WP=CE19761 /TR=Q9TZJ7 /GB=AAC67438.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064217(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064217 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-55) (sre-55) mRNA, complete cds. 11/11 None
GENEFINDER00000034849 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12329047:12330701:1 11/11 None
C50E10.7 ENSEMBL cdna:known chromosome:CEL140:II:12329197:12331025:1 gene:C50E10.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12329193-12330362(+) 97.37 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-55
Ensembl C50E10.7
Entrez Gene 183668 Entrez gene
SwissProt Q965H6 EMBL-EBI
WormBase CE38059 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_496618 Serpentine Receptor, class E (epsilon) family member (sre-55) [Caenorhabditis elegans] gb|AAK73866.2| Serpentine receptor, class e (epsilon) protein 55 [Caenorhabditis elegans] 0.0
blast NP_496618 Serpentine Receptor, class E (epsilon) family member (sre-55) [Caenorhabditis elegans] gb|AAK73866.2| Serpentine receptor, class e (epsilon) protein 55 [Caenorhabditis elegans] 1.0E-155
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 2.0E-99
blast NP_496616 Serpentine Receptor, class E (epsilon) family member (sre-53) [Caenorhabditis elegans] gb|AAK73862.2| Serpentine receptor, class e (epsilon) protein 53 [Caenorhabditis elegans] 3.0E-95
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 7.0E-85
blast NP_496616 Serpentine Receptor, class E (epsilon) family member (sre-53) [Caenorhabditis elegans] gb|AAK73862.2| Serpentine receptor, class e (epsilon) protein 53 [Caenorhabditis elegans] 9.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 1.5E-68
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.7E-55
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496618.2 7 30-52,65-87,121-143,163-185,189-211,254-276,291-310
C50E10.7 7 30-52,65-87,121-143,163-185,189-211,254-276,291-310
GENEFINDER00000034849 7 52-74,87-109,143-165,185-207,211-233,277-299,322-344
Sequence
Target Sequence 
>C. ELEGANS:185611_AT
atgattccccttgacaactttaaaggcgcatggccactattcctaggtggagctctaaca
tggtattatatatttatgatgactacgtgcctattcacattagcaatggagcgcactttc
gctagttttttaattaaaaattatgaaaacacaccgagaccgtatctcctagctctgcta
gttttattccaacaatttataatttttacaactacttatttgatatttttcaacaaactc
caatttatacctattattatttttcttgtagtaattaatacatctgcaatgataggattt
tttttaaatcgacagtatagtctgaaaatattacggctttttaagaagaagcccgaggag
tctatgaggaattatacgttggctgtcaggtttcaggcgaaggagaatttgagggttttt
aatctcaccgcccgtgtgttctcggttggatttttgttaattttaactggtgttctcgct
attataattgtcacatttgacattattccaacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGATTCCCCTTGACAACTTTAAAG 395 43 337 Antisense
TAAAGGCGCATGGCCACTATTCCTA 40 641 357 Antisense
TATTCCTAGGTGGAGCTCTAACATG 75 653 374 Antisense
GACTACGTGCCTATTCACATTAGCA 200 373 417 Antisense
GGAGCGCACTTTCGCTAGTTTTTTA 595 521 444 Antisense
CTAGCTCTGCTAGTTTTATTCCAAC 618 225 505 Antisense
GAAGCCCGAGGAGTCTATGAGGAAT 9 345 684 Antisense
AATTATACGTTGGCTGTCAGGTTTC 695 173 706 Antisense
GCCCGTGTGTTCTCGGTTGGATTTT 102 283 766 Antisense
AACTGGTGTTCTCGCTATTATAATT 515 143 801 Antisense
GTCACATTTGACATTATTCCAACCT 490 465 826 Antisense
Sequence Source Affymetrix Proprietary Database