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[185610_at]

Description ZK1240.4 /REP_DB=WormBase Gene ID /WP=CE15535 /TR=O16678 /GB=AAB66142.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 1.8
(-3)
A 		5.6
(-2.3)
A 		3.4
(-2.7)
A 		34.7
(3)
A 		33
B 1
(-3)
A 		5.6
(3)
A 		3.4
(0.1)
A 		1.6
(-2.2)
A 		5
C 1.3
(-2.2)
A 		5
(3)
A 		0.7
(-3)
A 		3.1
(0.3)
A 		4
avr 1.4
(-3) 		5.4
(-0.9) 		2.5
(-2.4) 		13.1
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 3.8
(2.8)
A 		3.9
(3)
A 		2.7
(0.7)
A 		1
(-2.6)
A 		0.8
(-3)
A 		3
(1.3)
A 		3
B 0.6
(-3)
A 		2.1
(-0.4)
A 		4
(3)
A 		4
(3)
A 		0.9
(-2.5)
A 		1.6
(-1.2)
A 		3
C 2.2
(0.3)
A 		2.9
(2)
A 		1.6
(-1.3)
A 		1.4
(-1.8)
A 		3.3
(3)
A 		0.9
(-3)
A 		2
avr 2.2
(-0.7) 		3
(3) 		2.8
(2.1) 		2.1
(-1.2) 		1.7
(-3) 		1.8
(-2.5) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.7
(-3)
A 		1.2
(-2.3)
A 		0.9
(-2.7)
A 		5.1
(3)
A 		4
B 0.3
(-3)
A 		1.4
(3)
A 		0.8
(-0.3)
A 		0.3
(-3)
A 		1
C 0.4
(-2)
A 		1.4
(3)
A 		0.2
(-3)
A 		0.5
(-1.5)
A 		1
avr 0.5
(-3) 		1.3
(0.2) 		0.6
(-2.6) 		2
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.7
(-0.5)
A 		1.4
(3)
A 		0.6
(-1)
A 		0.2
(-3)
A 		0.2
(-3)
A 		0.7
(-0.5)
A 		1
B 0.2
(-3)
A 		0.7
(0.3)
A 		1
(2.3)
A 		1.1
(3)
A 		0.4
(-1.7)
A 		0.6
(-0.3)
A 		1
C 0.8
(0.8)
A 		0.9
(1.5)
A 		0.4
(-2.3)
A 		0.3
(-3)
A 		1.1
(3)
A 		0.3
(-3)
A 		1
avr 0.6
(-1.8) 		1
(3) 		0.7
(-0.6) 		0.5
(-3) 		0.6
(-1.8) 		0.5
(-3) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4853
Sequence Type Exemplar sequence
Representative Public ID ZK1240.4 NCBI
Target Description ZK1240.4 /REP_DB=WormBase Gene ID /WP=CE15535 /TR=O16678 /GB=AAB66142.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061835 NCBI Caenorhabditis elegans ZK1240.4 (ZK1240.4) mRNA, complete cds. 11/11 None
ZK1240.4 ENSEMBL cdna:known chromosome:CEL140:II:2315085:2315623:1 gene:ZK1240.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039221 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2315083-2315622(+) 94.81 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1240.4
Entrez Gene 191539 Entrez gene
SwissProt O16678 EMBL-EBI
WormBase CE15535 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66142 Hypothetical protein ZK1240.4 [Caenorhabditis elegans] ref|NP_494236.1| ZK1240.4 [Caenorhabditis elegans] 5.0E-72
blast AAB66086 Hypothetical protein B0281.8 [Caenorhabditis elegans] ref|NP_494234.1| B0281.8 [Caenorhabditis elegans] 4.0E-33
blast AAB66144 Hypothetical protein ZK1240.8 [Caenorhabditis elegans] ref|NP_494242.1| ZK1240.8 [Caenorhabditis elegans] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185610_AT
ataaaattcgccagtcagttgatgaaaaagaaaagaaaataatcgatgatacaacggcag
aagcaacaagaatacggcaacttaatgaagaaaatataacatatttaactgatttgaaag
cgagacttgttgaaagtacagagacaattgagaagcgtaaaaatatgaatgatattaatc
tatataccaccgcaattgagctacctggaagatggtctcactggaacattaatattgcaa
gatatcgaccagctgacacaaagggaatgaatgtgaaacttcctaacttcaaatttcaag
atgaaaatcgaacgtatttcactttgtctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATAAAATTCGCCAGTCAGTTGATGA 447 25 56 Antisense
AAGCAACAAGAATACGGCAACTTAA 593 149 116 Antisense
AACTGATTTGAAAGCGAGACTTGTT 228 143 162 Antisense
GATATTAATCTATATACCACCGCAA 439 427 226 Antisense
TATACCACCGCAATTGAGCTACCTG 388 661 238 Antisense
GAGCTACCTGGAAGATGGTCTCACT 227 389 253 Antisense
GGTCTCACTGGAACATTAATATTGC 421 503 269 Antisense
TATTGCAAGATATCGACCAGCTGAC 569 665 288 Antisense
AAGATATCGACCAGCTGACACAAAG 390 155 294 Antisense
TGAATGTGAAACTTCCTAACTTCAA 439 573 323 Antisense
ATCGAACGTATTTCACTTTGTCTGA 2 35 362 Antisense
Sequence Source Affymetrix Proprietary Database