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[185609_at]

Description C37H5.10 /REP_DB=WormBase Gene ID /WP=CE08633 /TR=P91138 /GB=AAB42373.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 35      6grp_cgc > 39      6grp_cgc_sub > Cu      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 21.1
(-2.6)
A 		45.7
(3)
A 		36.2
(0.8)
A 		19.2
(-3)
A 		27
B 23.4
(0.3)
A 		35.8
(3)
A 		20.9
(-0.2)
A 		8.2
(-3)
A 		28
C 24.4
(-1.9)
A 		16.7
(-3)
A 		16.9
(-3)
A 		57.8
(3)
A 		41
avr 23
(-3) 		32.7
(3) 		24.7
(-1.9) 		28.4
(0.3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 38.2
(2.8)
A 		2.2
(-2.9)
A 		1.8
(-3)
A 		23.9
(0.5)
A 		39.3
(3)
A 		31
(1.7)
A 		38
B 12.5
(-1.3)
A 		14.1
(-0.9)
A 		30.7
(3)
A 		26
(1.9)
A 		5.3
(-3)
A 		27.3
(2.2)
A 		25
C 19.1
(-1.3)
A 		20.4
(-1)
A 		40.8
(3)
A 		10.4
(-3)
A 		28.9
(0.7)
A 		24.5
(-0.2)
A 		30
avr 23.3
(1.3) 		12.2
(-3) 		24.4
(1.8) 		20.1
(0.1) 		24.5
(1.8) 		27.6
(3) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 7.7
(1.1)
A 		9.9
(3)
A 		9.5
(2.7)
A 		2.8
(-3)
A 		7
B 7.4
(1.8)
A 		8.8
(3)
A 		4.8
(-0.4)
A 		1.8
(-3)
A 		7
C 8.1
(1)
A 		4.8
(-3)
A 		5.9
(-1.7)
A 		9.7
(3)
A 		5
avr 7.7
(2.8) 		7.8
(3) 		6.7
(0.8) 		4.8
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7
(0.4)
A 		0.8
(-2.8)
A 		0.4
(-3)
A 		6.1
(-0)
A 		11.9
(3)
A 		7.5
(0.7)
A 		12
B 4.3
(-1.4)
A 		4.7
(-1.1)
A 		7.4
(0.9)
A 		6.9
(0.6)
A 		2.1
(-3)
A 		10.2
(3)
A 		8
C 7.1
(0.6)
A 		6.2
(-0)
A 		10.4
(3)
A 		2.1
(-3)
A 		9.3
(2.2)
A 		8.2
(1.4)
A 		8
avr 6.1
(-0.2) 		3.9
(-3) 		6.1
(-0.2) 		5
(-1.6) 		7.8
(2) 		8.6
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15367
Sequence Type Exemplar sequence
Representative Public ID C37H5.10 NCBI
Target Description C37H5.10 /REP_DB=WormBase Gene ID /WP=CE08633 /TR=P91138 /GB=AAB42373.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071893(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071893 NCBI Caenorhabditis elegans Coexpressed With Polycystins family member (cwp-1) (cwp-1) mRNA, complete cds. 11/11 None
SNAP00000016586 ENSEMBL cdna:SNAP chromosome:CEL140:V:4840481:4841079:-1 11/11 None
GENEFINDER00000016600 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4840481:4841079:-1 11/11 None
C37H5.10 ENSEMBL cdna:known chromosome:CEL140:V:4840433:4841083:-1 gene:C37H5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4840480-4841079(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cwp-1
Ensembl C37H5.10
Entrez Gene 178876 Entrez gene
SwissProt P91138 EMBL-EBI
WormBase CE08633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB42373 Coexpressed with polycystins protein 1 [Caenorhabditis elegans] ref|NP_504294.1| Coexpressed With Polycystins family member (cwp-1) [Caenorhabditis elegans] 7.0E-59
blast AAB42374 Coexpressed with polycystins protein 2 [Caenorhabditis elegans] ref|NP_504295.1| Coexpressed With Polycystins family member (cwp-2) [Caenorhabditis elegans] 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:185609_AT
gttttgcctgcgcaactgttggagccagttatatggactccggcccattcaaattcgatg
actcttgcgaaccactcgaaccaccacgcaagccagaggtctccgaatgctatgaggcac
agccgaaagcatttttgccaaaagctttagaggagtatcgtgcattgggatacgactggg
gagagtttgtgcatgacgacgaagcggataaggctccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTTGCCTGCGCAACTGTTGGAGC 370 447 44 Antisense
TGCCTGCGCAACTGTTGGAGCCAGT 593 585 48 Antisense
GAGCCAGTTATATGGACTCCGGCCC 202 383 65 Antisense
TATATGGACTCCGGCCCATTCAAAT 390 661 73 Antisense
GCCCATTCAAATTCGATGACTCTTG 210 287 86 Antisense
CACGCAAGCCAGAGGTCTCCGAATG 695 199 128 Antisense
GTCTCCGAATGCTATGAGGCACAGC 303 471 142 Antisense
GAGGCACAGCCGAAAGCATTTTTGC 430 405 157 Antisense
GCCGAAAGCATTTTTGCCAAAAGCT 495 283 165 Antisense
AAGCTTTAGAGGAGTATCGTGCATT 483 149 185 Antisense
GACGACGAAGCGGATAAGGCTCCAG 604 379 238 Antisense
Sequence Source Affymetrix Proprietary Database