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[185608_at]

Description H03E18.1 /REP_DB=WormBase Gene ID /WP=CE11558 /TR=Q94248 /GB=AAB07557.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 07      6grp_high1_10_10 > 70      6grp_highest_nonorm > 52      6grp_total > 71      4grp_total > 49      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1179
1 2 3 4 range
A 71.7
(-3)
A 		1144
(3)
P 		1066.1
(2.6)
P 		84.9
(-2.9)
P 		1072
B 82.1
(-2.9)
A 		1086.2
(3)
P 		1091.7
(3)
P 		70
(-3)
P 		1022
C 45.8
(-3)
A 		989.2
(1.8)
P 		1224.9
(3)
P 		109.3
(-2.7)
P 		1179
avr 66.5
(-3) 		1073.1
(2.7) 		1127.6
(3) 		88.1
(-2.9) 		1061

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 905
1 2 3 4 5 6 range
A 457.8
(-0.9)
P 		954.9
(2.9)
P 		437.2
(-1.1)
P 		972.7
(3)
P 		782.4
(1.5)
P 		185.5
(-3)
P 		787
B 426.5
(-1)
P 		662.3
(0.8)
P 		608.4
(0.3)
P 		959.3
(3)
P 		601.4
(0.3)
P 		167.3
(-3)
P 		792
C 445.2
(-1.5)
P 		839.8
(1.3)
P 		817.8
(1.2)
P 		1072
(3)
P 		722.5
(0.5)
P 		228.5
(-3)
P 		844
avr 443.2
(-1.1) 		819
(1.6) 		621.1
(0.2) 		1001.3
(3) 		702.1
(0.8) 		193.8
(-3) 		808
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 26.1
(-2.7)
A 		248.3
(2.3)
P 		278.7
(3)
P 		12.4
(-3)
P 		266
B 26.2
(-2.7)
A 		268.3
(3)
P 		253
(2.6)
P 		14.9
(-3)
P 		253
C 15.2
(-3)
A 		284.4
(0.9)
P 		426.9
(3)
P 		18.4
(-3)
P 		412
avr 22.5
(-2.9) 		267
(2) 		319.5
(3) 		15.2
(-3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 84.4
(-2.2)
P 		339.6
(3)
P 		95.2
(-2)
P 		246.7
(1.1)
P 		236.1
(0.9)
P 		45.2
(-3)
P 		294
B 148.4
(-0.3)
P 		220.5
(1.9)
P 		147.7
(-0.3)
P 		254.1
(3)
P 		244.4
(2.7)
P 		62.4
(-3)
P 		192
C 165
(-0)
P 		256.3
(3)
P 		208.1
(1.4)
P 		215.6
(1.6)
P 		233.8
(2.2)
P 		76.5
(-3)
P 		180
avr 132.6
(-1) 		272.1
(3) 		150.3
(-0.5) 		238.8
(2.1) 		238.1
(2) 		61.4
(-3) 		211
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185608_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17275
Sequence Type Exemplar sequence
Representative Public ID H03E18.1 NCBI
Target Description H03E18.1 /REP_DB=WormBase Gene ID /WP=CE11558 /TR=Q94248 /GB=AAB07557.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077042(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077042 NCBI Caenorhabditis elegans H03E18.1 (H03E18.1) mRNA, complete cds. 11/11 A 
GENEFINDER00000040478 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8507850:8513836:1 11/11 None
SNAP00000040474 ENSEMBL cdna:SNAP chromosome:CEL140:X:8508066:8513836:1 11/11 None
H03E18.1 ENSEMBL cdna:known chromosome:CEL140:X:8507813:8514059:1 gene:H03E18.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8508064-8513835(+) 97.72 100.0
Public Domain and Genome References
Gene Title
Ensembl H03E18.1
Entrez Gene 181103 Entrez gene
SwissProt Q94248 EMBL-EBI
WormBase CE37653 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB07557 Hypothetical protein H03E18.1 [Caenorhabditis elegans] ref|NP_509443.2| H03E18.1 [Caenorhabditis elegans] 0.0
blast CAE74912 Hypothetical protein CBG22791 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003014 EMBL-EBI N/apple PAN 7.3E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 4.6E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 2.4E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 7.3E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 3.1E-10
Pfam IPR003014 EMBL-EBI N/apple PAN 4.6E-13
Pfam IPR003014 EMBL-EBI N/apple PAN 2.4E-21
Pfam IPR003014 EMBL-EBI N/apple PAN 1.5E-19
Pfam IPR003014 EMBL-EBI N/apple PAN 7.3E-10
Sequence
Target Sequence 
>C. ELEGANS:185608_AT
gcataccggaagctgaagggctcgaagatgatgaagtagagactgatattggtcaagagc
tttcaactggtcttaatgatgcaccagcaagcgtcccagcaccagagagcacaatttcaa
ttacttcaacaacagaaaaagtgacaacaactacgacaacacaagcaaaagcgagtggag
tgaagtctcacaagtttgatgagaaaattgacaagagcggaatgccacttccaagaatca
ctaccactacagagccatcaactactactgctggataccctccagcaggaagatgctcat
attctgcactctatcagacatccttccttggacgccgtcttctgaaggcagttcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATACCGGAAGCTGAAGGGCTCGA 578 299 2846 Antisense
GGTCAAGAGCTTTCAACTGGTCTTA 694 503 2896 Antisense
TAATGATGCACCAGCAAGCGTCCCA 10 637 2919 Antisense
GACAAGAGCGGAATGCCACTTCCAA 279 365 3055 Antisense
CACTTCCAAGAATCACTACCACTAC 42 197 3071 Antisense
CTACCACTACAGAGCCATCAACTAC 416 225 3086 Antisense
ACTACTACTGCTGGATACCCTCCAG 558 101 3106 Antisense
GATACCCTCCAGCAGGAAGATGCTC 136 425 3119 Antisense
ATGCTCATATTCTGCACTCTATCAG 353 43 3138 Antisense
CTCTATCAGACATCCTTCCTTGGAC 180 231 3154 Antisense
GACGCCGTCTTCTGAAGGCAGTTCG 104 381 3176 Antisense
Sequence Source Affymetrix Proprietary Database