[Home] | [Total List]

[185607_at]

Description Y59E1B.1 /REP_DB=WormBase Gene ID /WP=CE24510 /TR=Q9N331 /GB=AAF60817.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 28      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 7.8
(0.7)
A 		5.3
(-3)
A 		7.7
(0.5)
A 		9.4
(3)
A 		4
B 9.7
(-2.1)
A 		41.2
(3)
A 		4.5
(-3)
A 		5.5
(-2.8)
A 		37
C 30.2
(-0.4)
A 		8.6
(-2.4)
A 		2.2
(-3)
A 		67.2
(3)
M 		65
avr 15.9
(-0.1) 		18.4
(0.6) 		4.8
(-3) 		27.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 10.8
(-1.8)
A 		15.7
(-0.8)
A 		33.8
(3)
P 		5.2
(-3)
A 		6.7
(-2.7)
A 		16.3
(-0.7)
A 		29
B 44.6
(3)
A 		4.8
(-2.8)
A 		4.9
(-2.8)
A 		16
(-1.2)
A 		14.2
(-1.4)
A 		3.3
(-3)
A 		41
C 38
(3)
A 		27.9
(1.2)
A 		6.1
(-2.6)
A 		8.1
(-2.3)
A 		3.9
(-3)
A 		7.7
(-2.3)
A 		34
avr 31.1
(3) 		16.1
(-0.9) 		14.9
(-1.3) 		9.8
(-2.6) 		8.3
(-3) 		9.1
(-2.8) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.9
(3)
A 		1.2
(-3)
A 		2
(-0.2)
A 		1.4
(-2.3)
A 		2
B 3.1
(-1.6)
A 		10.2
(3)
A 		1
(-3)
A 		1.2
(-2.9)
A 		9
C 10
(2.3)
A 		2.5
(-2)
A 		0.8
(-3)
A 		11.3
(3)
M 		11
avr 5.3
(3) 		4.6
(2) 		1.3
(-3) 		4.6
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 2
(-2.3)
A 		5.6
(1.2)
A 		7.4
(3)
P 		1.3
(-3)
A 		2
(-2.3)
A 		4
(-0.3)
A 		6
B 15.5
(3)
A 		1.6
(-2.8)
A 		1.2
(-3)
A 		4.2
(-1.7)
A 		5.8
(-1.1)
A 		1.2
(-3)
A 		14
C 14.1
(3)
A 		8.5
(0.4)
A 		1.6
(-2.9)
A 		1.6
(-2.9)
A 		1.3
(-3)
A 		2.6
(-2.4)
A 		13
avr 10.5
(3) 		5.2
(-0.9) 		3.4
(-2.3) 		2.4
(-3) 		3
(-2.6) 		2.6
(-2.9) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185607_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18369
Sequence Type Exemplar sequence
Representative Public ID Y59E1B.1 NCBI
Target Description Y59E1B.1 /REP_DB=WormBase Gene ID /WP=CE24510 /TR=Q9N331 /GB=AAF60817.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075944
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000002667 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1872141:1890513:1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075944 2/11 Cross Hyb Matching Probes None
Y59E1B.1 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1879370-1880486(+) 96.15 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60817 Hypothetical protein Y59E1B.1 [Caenorhabditis elegans] ref|NP_508345.2| Y59E1B.1 [Caenorhabditis elegans] 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:185607_AT
tcagcaactcatcgcaaatcacatttgatgtcagcggcgaaggaactgaatcaaggtaag
caaattcccgtcattttctggaaatattttgaaacggcggcaatttgtttacagaaaaat
tcaaagaaaatgtactcaatttggttacaggattggaatatttcaaataatcgttcggga
gtacagtttcagatatgccgggtaagcaattgcttctcattttcagaaattgtatgtgaa
aaagagagccttttgtttacagagaccaatctcattgtaccacgtttcaaaagaaaaagc
tacctttcacattttccgtgcagctcaatccatcaatatcagcgctcaagaaaccttatg
acacatctcggacatcctctcccggaacagcaagaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCAACTCATCGCAAATCACATT 373 625 106 Antisense
TCAAGGTAAGCAAATTCCCGTCATT 438 633 156 Antisense
GAGTACAGTTTCAGATATGCCGGGT 566 399 284 Antisense
TAAGCAATTGCTTCTCATTTTCAGA 39 637 308 Antisense
GAGAGCCTTTTGTTTACAGAGACCA 448 393 349 Antisense
GACCAATCTCATTGTACCACGTTTC 673 383 369 Antisense
TACCTTTCACATTTTCCGTGCAGCT 634 647 406 Antisense
CGTGCAGCTCAATCCATCAATATCA 529 245 422 Antisense
CAATATCAGCGCTCAAGAAACCTTA 217 181 439 Antisense
ACCTTATGACACATCTCGGACATCC 5 87 458 Antisense
CATCCTCTCCCGGAACAGCAAGAGA 631 209 478 Antisense
Sequence Source Affymetrix Proprietary Database