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[185605_at]

Description Y46H3C.6 /REP_DB=WormBase Gene ID /WP=CE24317 /TR=Q9N4W1 /GB=AAF60628.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 22.2
(1)
A 		4.6
(-3)
A 		5.7
(-2.8)
A 		31.3
(3)
A 		27
B 5.2
(-2.4)
A 		5.3
(-2.3)
A 		11.1
(3)
A 		4.5
(-3)
A 		7
C 13
(-1.6)
A 		13.6
(-1.5)
A 		5.7
(-3)
A 		37
(3)
A 		31
avr 13.5
(-0.9) 		7.8
(-2.9) 		7.5
(-3) 		24.3
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 8.6
(-2.1)
A 		5.3
(-2.5)
A 		6.7
(-2.3)
A 		1.9
(-3)
A 		46.2
(3)
A 		2.9
(-2.9)
A 		44
B 6.8
(0.1)
A 		2.9
(-2.4)
A 		3
(-2.3)
A 		4.2
(-1.5)
A 		11.3
(3)
A 		1.9
(-3)
A 		9
C 17.6
(0.2)
A 		6
(-2.8)
A 		5.3
(-3)
A 		24
(1.8)
A 		12.5
(-1.1)
A 		28.5
(3)
A 		23
avr 11
(-1) 		4.7
(-3) 		5
(-2.9) 		10
(-1.3) 		23.3
(3) 		11.1
(-0.9) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 8.1
(3)
A 		1
(-3)
A 		1.5
(-2.6)
A 		4.6
(0)
A 		7
B 1.7
(-0.2)
A 		1.3
(-1.6)
A 		2.6
(3)
A 		0.9
(-3)
A 		2
C 4.3
(0.3)
A 		3.9
(-0.3)
A 		2
(-3)
A 		6.2
(3)
A 		4
avr 4.7
(3) 		2.1
(-2.8) 		2
(-3) 		3.9
(1.2) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 1.6
(-2.5)
A 		1.9
(-2.4)
A 		1.5
(-2.6)
A 		0.5
(-3)
A 		13.9
(3)
A 		0.7
(-2.9)
A 		13
B 2.4
(-0.4)
A 		1
(-2.5)
A 		0.7
(-3)
A 		1.1
(-2.4)
A 		4.6
(3)
A 		0.7
(-3)
A 		4
C 6.5
(0.8)
A 		1.8
(-2.7)
A 		1.4
(-3)
A 		4.8
(-0.5)
A 		4
(-1.1)
A 		9.5
(3)
A 		8
avr 3.5
(-0.8) 		1.6
(-2.6) 		1.2
(-3) 		2.1
(-2.1) 		7.5
(3) 		3.6
(-0.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185605_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15266
Sequence Type Exemplar sequence
Representative Public ID Y46H3C.6 NCBI
Target Description Y46H3C.6 /REP_DB=WormBase Gene ID /WP=CE24317 /TR=Q9N4W1 /GB=AAF60628.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071084
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000038925 ENSEMBL cdna:SNAP chromosome:CEL140:V:1698417:1699546:-1 None
NM_071084 NCBI Caenorhabditis elegans Y46H3C.6 (Y46H3C.6) mRNA, complete cds. None
Y46H3C.6 ENSEMBL cdna:known chromosome:CEL140:V:1697720:1699546:-1 gene:Y46H3C.6 None
GENEFINDER00000038931 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1691685:1699546:-1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_171052 1/11 Cross Hyb Matching Probes None
SNAP00000023652 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023681 1/11 Cross Hyb Matching Probes None
SNAP00000038924 5/11 Cross Hyb Matching Probes None
Y54G11A.14 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1697714-1699546(-) 73.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3C.6
Entrez Gene 189968 Entrez gene
SwissProt Q9N4W1 EMBL-EBI
WormBase CE35806 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60628 Hypothetical protein Y46H3C.6 [Caenorhabditis elegans] ref|NP_503485.2| Y46H3C.6 [Caenorhabditis elegans] 1.0E-164
blast AAF60628 Hypothetical protein Y46H3C.6 [Caenorhabditis elegans] ref|NP_503485.2| Y46H3C.6 [Caenorhabditis elegans] 3.0E-73
blast AAF60628 Hypothetical protein Y46H3C.6 [Caenorhabditis elegans] ref|NP_503485.2| Y46H3C.6 [Caenorhabditis elegans] 9.0E-73
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 6.0E-45
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 3.0E-41
blast CAD31697 Hypothetical protein Y54G11A.14 [Caenorhabditis elegans] ref|NP_741059.1| Y54G11A.14 [Caenorhabditis elegans] 3.0E-26
blast AAG23374 Hypothetical protein Y67D8C.6 [Caenorhabditis elegans] ref|NP_500287.1| Y67D8C.6 [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185605_AT
gatggcgggcgatgatgccgaagcaatcgacgatgcggtgccagacattgaggatatgga
gtgtgatgagtattttgtgatgccgttcaagtcagcgactcagaaaaaattggtggtttt
taatgtcactggtggtcaatcggcggccctgctcactgccagaattgataaagcgcgatg
gatgagctcattcagcttcgatttcccttctggccagtttctttggccctcaatttgtat
ggacgatttgtcaaattgcacatcttggccacctcgtaattcatccaacttcgtatcaca
cgatgaggctctccaagatgtgcatttgatcaagaccgccttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGCGGGCGATGATGCCGAAGCA 142 407 750 Antisense
TCGACGATGCGGTGCCAGACATTGA 524 601 776 Antisense
TGATGCCGTTCAAGTCAGCGACTCA 610 565 827 Antisense
AATGTCACTGGTGGTCAATCGGCGG 597 163 871 Antisense
TGAGCTCATTCAGCTTCGATTTCCC 547 569 932 Antisense
TTCTGGCCAGTTTCTTTGGCCCTCA 383 693 957 Antisense
TTTGGCCCTCAATTTGTATGGACGA 672 665 971 Antisense
TGTCAAATTGCACATCTTGGCCACC 4 557 998 Antisense
TTGGCCACCTCGTAATTCATCCAAC 350 709 1014 Antisense
TCGTATCACACGATGAGGCTCTCCA 247 605 1040 Antisense
TGTGCATTTGATCAAGACCGCCTTC 371 557 1068 Antisense
Sequence Source Affymetrix Proprietary Database