[Home] | [Total List]

[185604_s_at]

Description C44E4.1B /REP_DB=WormBase Gene ID /WP=CE23595 /TR=O01808 /GB=AAD47120.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_high_8_8 > 32      6grp_highest_nonorm > 74      6grp_total > 36      4grp_total > 47      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 707
1 2 3 4 range
A 1008.2
(3)
P 		342
(-3)
P 		501.7
(-1.6)
P 		504
(-1.5)
P 		666
B 1049
(3)
P 		502.4
(-1.8)
P 		364.5
(-3)
M 		545.5
(-1.4)
P 		685
C 893.1
(3)
P 		440.5
(-2.5)
P 		491.4
(-1.9)
P 		399.8
(-3)
P 		493
avr 983.4
(3) 		428.3
(-3) 		452.5
(-2.7) 		483.1
(-2.4) 		555

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 382
1 2 3 4 5 6 range
A 699.5
(0.1)
P 		860.4
(3)
P 		524.3
(-3)
P 		727.3
(0.6)
P 		576.1
(-2.1)
P 		727.5
(0.6)
P 		336
B 791.6
(2.6)
P 		815.2
(3)
P 		513.4
(-2.4)
P 		683.7
(0.7)
P 		478.7
(-3)
P 		685.6
(0.7)
P 		337
C 848.3
(3)
P 		827.8
(2.7)
P 		785.6
(1.9)
P 		726.7
(1)
P 		491.9
(-3)
P 		659.2
(-0.2)
P 		356
avr 779.8
(2) 		834.5
(3) 		607.8
(-1.3) 		712.6
(0.7) 		515.6
(-3) 		690.8
(0.3) 		319
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 300
1 2 3 4 range
A 367.1
(3)
P 		74.2
(-3)
P 		131.1
(-1.8)
P 		73.8
(-3)
P 		293
B 334.5
(3)
P 		124.1
(-2)
P 		84.5
(-3)
M 		116.2
(-2.2)
P 		250
C 295.6
(3)
P 		126.7
(-1.4)
P 		171.3
(-0.3)
P 		67.4
(-3)
P 		228
avr 332.4
(3) 		108.3
(-2.5) 		129
(-1.9) 		85.8
(-3) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 129
(-2.5)
P 		306
(3)
P 		114.2
(-3)
P 		184.4
(-0.8)
P 		173.8
(-1.1)
P 		177.1
(-1)
P 		192
B 275.4
(3)
P 		271.3
(2.8)
P 		124.7
(-3)
P 		181.1
(-0.8)
P 		194.5
(-0.2)
P 		255.7
(2.2)
P 		151
C 314.4
(3)
P 		252.6
(0.8)
P 		200
(-1.1)
P 		146.1
(-3)
P 		159.2
(-2.5)
P 		220.7
(-0.3)
P 		168
avr 239.6
(1.3) 		276.6
(3) 		146.3
(-3) 		170.5
(-1.9) 		175.8
(-1.6) 		217.8
(0.3) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185604_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.638
Sequence Type Exemplar sequence
Representative Public ID C44E4.1B NCBI
Target Description C44E4.1B /REP_DB=WormBase Gene ID /WP=CE23595 /TR=O01808 /GB=AAD47120.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059007(11), NM_059006(11), NM_170851(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059007 NCBI Caenorhabditis elegans C44E4.1b (C44E4.1) mRNA, complete cds. 11/11 None
NM_059006 NCBI Caenorhabditis elegans C44E4.1a (C44E4.1) mRNA, complete cds. 11/11 None
NM_170851 NCBI Caenorhabditis elegans C44E4.1c (C44E4.1) mRNA, complete cds. 11/11 None
SNAP00000019658 ENSEMBL cdna:SNAP chromosome:CEL140:I:4610269:4633348:-1 11/11 None
GENEFINDER00000019663 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4610269:4633348:-1 11/11 None
C44E4.1b.1 ENSEMBL cdna:known chromosome:CEL140:I:4610148:4614347:-1 gene:C44E4.1 11/11 None
C44E4.1b.2 ENSEMBL cdna:known chromosome:CEL140:I:4610158:4614113:-1 gene:C44E4.1 11/11 None
C44E4.1c ENSEMBL cdna:known chromosome:CEL140:I:4610269:4622973:-1 gene:C44E4.1 11/11 None
C44E4.1a ENSEMBL cdna:known chromosome:CEL140:I:4610269:4622973:-1 gene:C44E4.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4610268-4614010(-) 100.0 100.0
Public Domain and Genome References
Ensembl C44E4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD47119 Hypothetical protein C44E4.1a [Caenorhabditis elegans] ref|NP_491407.1| C44E4.1a [Caenorhabditis elegans] 0.0
blast AAD47120 Hypothetical protein C44E4.1b [Caenorhabditis elegans] ref|NP_491408.1| C44E4.1b [Caenorhabditis elegans] 0.0
blast AAM15563 Hypothetical protein C44E4.1c [Caenorhabditis elegans] ref|NP_740838.1| C44E4.1c [Caenorhabditis elegans] 0.0
blast D87757 protein C44E4.1a [imported] - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.6E-69
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Pfam IPR003126 EMBL-EBI Zn-finger (putative), N-recognin 6.8E-14
Pfam IPR004190 EMBL-EBI DNA polymerase processivity factor 1.9E-38
Sequence
Target Sequence 
>C. ELEGANS:185604_S_AT
gatgcgtggattgatgcacttcatcgatttgaaaatgatgttggaagagtttccggattg
gctcacggagttgttaaccggaatttcgtttttgtggatatctgcaatttgattgatcga
ttcatttacaaaagatcattctccaatcaatccgaaggtggaggtcgtgaatcaaatatg
caatatcttgcaattcttcatcttcttggaatcactcttccagccgacgcagaacttgaa
atctctgctccgaatcatcgtctcattgcgttcctcttcaccgagctaactgctgatagt
tggaatgatcagaggaatgatgtactccgagcaggaattaatgatgctcagacaaatgga
gcacccgccacgtgggatggattcaagccaacactaatgacatgggcatttgtagatgca
tatttcaataaggttatcaagattactggagaggatcgtctcgaatggctccgtgagcat
cttgtagagactatcaacaagacacgtggattcgtggatgactttgactcaaatattctc
ccatgtgaagatgttgcagaattctgcgatgtaactggagctccgattgacgatgtca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCGTGGATTGATGCACTTCATC 500 413 1828 Antisense
GGAAGAGTTTCCGGATTGGCTCACG 559 531 1870 Antisense
TTGGCTCACGGAGTTGTTAACCGGA 110 701 1885 Antisense
ATATCTTGCAATTCTTCATCTTCTT 179 21 2010 Antisense
CTTCCAGCCGACGCAGAACTTGAAA 400 217 2044 Antisense
GAACTTGAAATCTCTGCTCCGAATC 568 347 2059 Antisense
CTCTTCACCGAGCTAACTGCTGATA 699 229 2101 Antisense
CACCCGCCACGTGGGATGGATTCAA 203 201 2189 Antisense
GTCTCGAATGGCTCCGTGAGCATCT 66 471 2285 Antisense
GTGGATTCGTGGATGACTTTGACTC 413 489 2333 Antisense
ACTGGAGCTCCGATTGACGATGTCA 368 95 2401 Antisense
Sequence Source Affymetrix Proprietary Database