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[185603_at]

Description T07F12.1 /REP_DB=WormBase Gene ID /WP=CE02865 /TR=Q22323 /GB=AAA68419.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 48      4grp_high_8_8 > 42      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 54      6grp_highest_sub > De      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 298.1
(3)
P 		198.4
(-0.6)
P 		166.5
(-1.8)
P 		132.2
(-3)
P 		166
B 293.4
(3)
P 		247.6
(1.1)
P 		206.4
(-0.5)
P 		145
(-3)
P 		148
C 281.5
(3)
P 		234.6
(0.1)
P 		195.1
(-2.3)
P 		183.3
(-3)
P 		98
avr 291
(3) 		226.9
(0.2) 		189.3
(-1.4) 		153.5
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 244.9
(2.5)
P 		254.3
(3)
P 		187
(-0.5)
P 		238.4
(2.2)
P 		198
(0.1)
P 		139.3
(-3)
P 		115
B 228.3
(3)
P 		202.7
(1.3)
P 		177.8
(-0.4)
P 		171.8
(-0.8)
P 		193.2
(0.6)
P 		139.6
(-3)
P 		89
C 263.9
(3)
P 		211.2
(0.6)
P 		192.4
(-0.3)
P 		195
(-0.2)
P 		209.5
(0.5)
P 		134.3
(-3)
P 		130
avr 245.7
(3) 		222.7
(1.7) 		185.7
(-0.3) 		201.7
(0.6) 		200.2
(0.5) 		137.7
(-3) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 108.5
(3)
P 		43.1
(-1.4)
P 		43.5
(-1.4)
P 		19.4
(-3)
P 		89
B 93.6
(3)
P 		61.2
(-0.1)
P 		47.8
(-1.4)
P 		30.9
(-3)
P 		63
C 93.2
(3)
P 		67.4
(0.5)
P 		68
(0.6)
P 		30.9
(-3)
P 		62
avr 98.4
(3) 		57.2
(-0.5) 		53.1
(-0.8) 		27.1
(-3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 45.1
(-1.8)
P 		90.5
(3)
P 		40.7
(-2.3)
P 		60.5
(-0.2)
P 		59.7
(-0.3)
P 		33.9
(-3)
P 		57
B 79.4
(3)
P 		67.5
(1)
P 		43.2
(-3)
P 		45.5
(-2.6)
P 		78.5
(2.9)
P 		52.1
(-1.5)
P 		36
C 97.8
(3)
P 		64.5
(-0.4)
P 		49
(-2)
P 		39.2
(-3)
P 		67.8
(-0.1)
P 		45
(-2.4)
P 		59
avr 74.1
(3) 		74.2
(3) 		44.3
(-2.9) 		48.4
(-2.1) 		68.7
(1.9) 		43.7
(-3) 		31
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16138
Sequence Type Exemplar sequence
Representative Public ID T07F12.1 NCBI
Target Description T07F12.1 /REP_DB=WormBase Gene ID /WP=CE02865 /TR=Q22323 /GB=AAA68419.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076431(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076431 NCBI Caenorhabditis elegans T07F12.1 (T07F12.1) mRNA, complete cds. 11/11 None
SNAP00000035173 ENSEMBL cdna:SNAP chromosome:CEL140:X:4894029:4896159:1 11/11 None
GENEFINDER00000035179 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4894029:4896159:1 11/11 None
T07F12.1 ENSEMBL cdna:known chromosome:CEL140:X:4894029:4896159:1 gene:T07F12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4894029-4896160(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T07F12.1
Entrez Gene 188238 Entrez gene
SwissProt Q22323 EMBL-EBI
WormBase CE35757 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.18227.1.S1_AT similar to Cbl-interacting protein Sts-1 cfa
DROSOPHILA_2:1625603_AT dm
DROSGENOME1:152223_AT dm
CHICKEN:GGA.18429.1.S1_AT nm23-phosphorylated unknown substrate gga
CHICKEN:GGAAFFX.4089.1.S1_S_AT nm23-phosphorylated unknown substrate gga
CHICKEN:GGAAFFX.4089.2.S1_S_AT nm23-phosphorylated unknown substrate gga
HG-U133_PLUS_2:238587_AT Cbl-interacting protein Sts-1 hs
HG-U133B:238587_AT Cbl-interacting protein Sts-1 hs
HG-U133_PLUS_2:238462_AT Cbl-interacting protein Sts-1 hs
HG-U133B:238462_AT Cbl-interacting protein Sts-1 hs
HG-U133_PLUS_2:228359_AT Cbl-interacting protein Sts-1 hs
HG-U133B:228359_AT Cbl-interacting protein Sts-1 hs
HU35KSUBB:RC_AA037664_AT Cbl-interacting protein Sts-1 hs
HU35KSUBB:RC_AA232138_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.55067.0.A2_3P_X_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.55067.0.A2_3P_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.55067.0.A1_3P_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.187625.0.A1_3P_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.163714.0.A1_3P_AT Cbl-interacting protein Sts-1 hs
U133_X3P:228353_3P_X_AT Cbl-interacting protein Sts-1 hs
HG-U133_PLUS_2:228353_X_AT Cbl-interacting protein Sts-1 hs
HG-U133B:228353_X_AT Cbl-interacting protein Sts-1 hs
HG-U95B:53689_AT Cbl-interacting protein Sts-1 hs
HG-U95C:65034_AT Cbl-interacting protein Sts-1 hs
HG-U95E:67722_AT Cbl-interacting protein Sts-1 hs
HG-U95E:74067_AT Cbl-interacting protein Sts-1 hs
HG-U95D:91710_AT Cbl-interacting protein Sts-1 hs
HG-U133_PLUS_2:240387_AT Cbl-interacting protein Sts-1 hs
HG-U133B:240387_AT Cbl-interacting protein Sts-1 hs
HG-U133_PLUS_2:244068_AT Cbl-interacting protein Sts-1 hs
HG-U133B:244068_AT Cbl-interacting protein Sts-1 hs
HG-U95D:68154_AT Cbl-interacting protein Sts-1 hs
HG-U95D:91986_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.170785.0.A1_3P_AT Cbl-interacting protein Sts-1 hs
U133_X3P:HS.254974.0.A1_3P_AT Cbl-interacting protein Sts-1 hs
MG-U74BV2:112830_AT RIKEN cDNA 2810457I06 gene mm
MOE430B:1429475_AT RIKEN cDNA 2810457I06 gene mm
MOUSE430_2:1429475_AT RIKEN cDNA 2810457I06 gene mm
MOE430B:1436805_AT RIKEN cDNA 2810457I06 gene mm
MOUSE430_2:1436805_AT RIKEN cDNA 2810457I06 gene mm
MG-U74BV2:116257_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
MOE430B:1435703_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
MOUSE430_2:1435703_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
MOE430B:1459418_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
MOUSE430_2:1459418_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
MU19KSUBA:TC17986_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
MU19KSUBB:TC29872_AT Nims mRNA for NF-E2 induceble megakaryocyte specific protein mm
RG-U34B:RC_AA964843_AT similar to RIKEN cDNA 2810457I06 (predicted) rn
RG-U34C:RC_AI071324_AT similar to RIKEN cDNA 2810457I06 (predicted) rn
RAE230B:1397592_AT similar to RIKEN cDNA 2810457I06 (predicted) rn
RAT230_2:1397592_AT similar to RIKEN cDNA 2810457I06 (predicted) rn
RAE230B:1379284_AT similar to RIKEN cDNA 2810457I06 (predicted) rn
RAT230_2:1379284_AT similar to RIKEN cDNA 2810457I06 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA68419 Hypothetical protein T07F12.1 [Caenorhabditis elegans] ref|NP_508832.2| T07F12.1 [Caenorhabditis elegans] 1.0E-168
blast AAA68419 Hypothetical protein T07F12.1 [Caenorhabditis elegans] ref|NP_508832.2| T07F12.1 [Caenorhabditis elegans] 1.0E-164
blast CAE68662 Hypothetical protein CBG14563 [Caenorhabditis briggsae] 1.0E-154
blast CAE68662 Hypothetical protein CBG14563 [Caenorhabditis briggsae] 1.0E-152
blast XP_394838 PREDICTED: similar to RIKEN cDNA 2810457I06 [Apis mellifera] 5.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001345 EMBL-EBI Phosphoglycerate/bisphosphoglycerate mutase 4.3E-5
Sequence
Target Sequence 
>C. ELEGANS:185603_AT
tcagttttccgttgaacctgggctttatgagtggatggtatttgcaaggtacgcaagacc
atgctggattccgccaaaagatttgaaaaagcttggctaccctgtacaagaaaactatgt
accatgttggacggataaggagcttcgaatgaatgaaaccttagcagatttctatcaaag
atcgtttggttctataaacaaaattttgtcggaatgcacagaaggaaacattctcattgt
ggctcatggtgcatcactcgaaacatgcactcggcagctggtcggcggtgatatcagatc
aactgacgatttctactacctacttcaaaacacaccatacttgtcgtgtgtagaagtgaa
ctctcgagaaggattatggagactagtgggcagcccgattccgtcgttttcacacacgta
caatcgcacttttgatccattgcagctcgtcacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGTTTTCCGTTGAACCTGGGCTT 672 607 411 Antisense
TACGCAAGACCATGCTGGATTCCGC 618 647 460 Antisense
GAAAAAGCTTGGCTACCCTGTACAA 461 353 495 Antisense
GAAACATTCTCATTGTGGCTCATGG 158 357 635 Antisense
GGCTCATGGTGCATCACTCGAAACA 371 539 651 Antisense
CTCGAAACATGCACTCGGCAGCTGG 604 227 667 Antisense
TGACGATTTCTACTACCTACTTCAA 312 571 714 Antisense
AGACTAGTGGGCAGCCCGATTCCGT 127 69 790 Antisense
TTCCGTCGTTTTCACACACGTACAA 168 697 809 Antisense
ACACGTACAATCGCACTTTTGATCC 160 109 824 Antisense
TTTGATCCATTGCAGCTCGTCACAA 21 669 841 Antisense
Sequence Source Affymetrix Proprietary Database