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[185602_at]

Description Y43F8B.12 /REP_DB=WormBase Gene ID /WP=CE21896 /TR=Q9XWX0 /GB=CAA21517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 10.1
(-2)
A 		7.2
(-2.6)
A 		4.7
(-3)
A 		38.4
(3)
A 		34
B 7.3
(-2.4)
A 		28.9
(-0.2)
A 		1.7
(-3)
A 		60.4
(3)
P 		59
C 8.6
(-2.8)
A 		11.9
(-2.1)
A 		7.9
(-3)
A 		35
(3)
A 		27
avr 8.7
(-2.4) 		16
(-1.3) 		4.8
(-3) 		44.6
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 5.8
(-2.4)
A 		7.9
(-2.1)
A 		30.3
(1.3)
A 		2.1
(-3)
A 		41.3
(3)
A 		7.2
(-2.2)
A 		39
B 8
(-1.5)
A 		4.7
(-2.8)
A 		4.1
(-3)
A 		5.8
(-2.3)
A 		5.7
(-2.4)
A 		19.6
(3)
A 		16
C 2.7
(-2.8)
A 		3
(-2.7)
A 		2.5
(-2.8)
A 		35.8
(3)
A 		1.3
(-3)
A 		22.3
(0.7)
A 		35
avr 5.5
(-2.8) 		5.2
(-3) 		12.3
(0.8) 		14.6
(2) 		16.1
(2.8) 		16.4
(3) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.7
(0.4)
A 		1.6
(-2.5)
A 		1.2
(-3)
A 		5.6
(3)
A 		4
B 2.3
(-2.1)
A 		7.1
(0.2)
A 		0.4
(-3)
A 		12.9
(3)
P 		13
C 2.9
(-2.8)
A 		3.4
(-1.8)
A 		2.8
(-3)
A 		5.9
(3)
A 		3
avr 3
(-1.6) 		4
(-0.7) 		1.5
(-3) 		8.1
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 1.1
(-2.7)
A 		2.8
(-1.9)
A 		6.6
(0)
A 		0.5
(-3)
A 		12.5
(3)
A 		1.8
(-2.4)
A 		12
B 2.8
(-1.3)
A 		1.6
(-2.4)
A 		1
(-3)
A 		1.5
(-2.5)
A 		2.3
(-1.8)
A 		7.3
(3)
A 		6
C 1
(-2.5)
A 		0.9
(-2.6)
A 		0.6
(-2.8)
A 		7.2
(2.7)
A 		0.4
(-3)
A 		7.5
(3)
A 		7
avr 1.6
(-3) 		1.8
(-2.7) 		2.7
(-1.3) 		3.1
(-0.7) 		5.1
(2.4) 		5.5
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185602_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12757
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.12 NCBI
Target Description Y43F8B.12 /REP_DB=WormBase Gene ID /WP=CE21896 /TR=Q9XWX0 /GB=CAA21517.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075386(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075386 NCBI Caenorhabditis elegans Y43F8B.12 (Y43F8B.12) mRNA, complete cds. 11/11 None
SNAP00000027172 ENSEMBL cdna:SNAP chromosome:CEL140:V:19470956:19479515:1 11/11 None
Y43F8B.12 ENSEMBL cdna:known chromosome:CEL140:V:19471640:19472127:1 gene:Y43F8B.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19471639-19472127(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.12
Entrez Gene 189875 Entrez gene
SwissProt Q9XWX0 EMBL-EBI
WormBase CE21896 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21506 Hypothetical protein Y43F8B.10 [Caenorhabditis elegans] ref|NP_507789.2| Y43F8B.10 [Caenorhabditis elegans] 1.0E-109
blast CAA21517 Hypothetical protein Y43F8B.12 [Caenorhabditis elegans] ref|NP_507787.1| Y43F8B.12 [Caenorhabditis elegans] 4.0E-81
blast CAA21517 Hypothetical protein Y43F8B.12 [Caenorhabditis elegans] ref|NP_507787.1| Y43F8B.12 [Caenorhabditis elegans] 1.0E-75
blast CAA21505 Hypothetical protein Y43F8B.11 [Caenorhabditis elegans] ref|NP_507788.1| Y43F8B.11 [Caenorhabditis elegans] 2.0E-55
blast CAB03923 Hypothetical protein C25F9.5 [Caenorhabditis elegans] ref|NP_507777.1| C25F9.5 [Caenorhabditis elegans] 9.0E-23
blast CAB07268 Hypothetical protein M04C3.1a [Caenorhabditis elegans] emb|CAB03924.1| Hypothetical protein M04C3.1a [Caenorhabditis elegans] ref|NP_507782.1| M04C3.1a [Caenorhabditis elegans] 8.0E-21
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000027172 1 313-335
Sequence
Target Sequence 
>C. ELEGANS:185602_AT
ccgcccgacgttgtgattttctgcgaactcatctatggcgctgcaatcacatgccttaag
aagtttttcctccgtgatgtgttcaaaatctttatcactagtcataaggccaacatagat
cttatggacgttgttataaaaagcttcacggactctactaatagtggaaaattgtcaaaa
gcctgggcacacgctcaaaactgtcataccaacttctacgagctcaaaaacatgaaaaaa
aaactgaagcagaatatactgaaatctgtgagcgaaatgaacaatatcatcaaaaaagct
gacattgacatgattaataacaatttgaagccatttttgaaacaaatggaaaaactacca
accaagaaaaccgtgactat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGCCCGACGTTGTGATTTTCTGCG 656 261 28 Antisense
TCTGCGAACTCATCTATGGCGCTGC 124 609 47 Antisense
ATGGCGCTGCAATCACATGCCTTAA 278 53 62 Antisense
CATGCCTTAAGAAGTTTTTCCTCCG 316 211 77 Antisense
GTTTTTCCTCCGTGATGTGTTCAAA 273 447 90 Antisense
TATCACTAGTCATAAGGCCAACATA 78 645 120 Antisense
GGCCAACATAGATCTTATGGACGTT 156 543 135 Antisense
AAAGCTTCACGGACTCTACTAATAG 94 123 167 Antisense
TGTCAAAAGCCTGGGCACACGCTCA 203 557 200 Antisense
GGCACACGCTCAAAACTGTCATACC 474 533 213 Antisense
TACCAACCAAGAAAACCGTGACTAT 87 625 383 Antisense
Sequence Source Affymetrix Proprietary Database