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[185601_s_at] --- /// --- /// ---

Description F45D11.4 /REP_DB=WormBase Gene ID /WP=CE23738 /TR=Q9N5T1 /GB=AAF39818.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 43      4grp_high_8_8 > 45      6grp_highest_nonorm > 71      6grp_total > 20      4grp_total > 50      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 395
1 2 3 4 range
A 172.4
(-1)
P 		438.3
(3)
P 		235.4
(-0.1)
P 		43.4
(-3)
A 		395
B 60.2
(-2.7)
P 		333.7
(3)
P 		261.7
(1.5)
P 		44.9
(-3)
A 		289
C 82.4
(-3)
P 		215.7
(1.2)
P 		270.8
(3)
P 		110.3
(-2.1)
P 		188
avr 105
(-2.1) 		329.2
(3) 		256
(1.3) 		66.2
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 604
1 2 3 4 5 6 range
A 239.2
(-1.4)
P 		677.8
(3)
P 		350.1
(-0.3)
P 		415.9
(0.4)
P 		284
(-0.9)
P 		74.3
(-3)
P 		604
B 284.9
(-1.5)
P 		528.2
(2.1)
P 		584.9
(3)
P 		364.6
(-0.3)
P 		296.3
(-1.4)
P 		188.8
(-3)
P 		396
C 173.5
(-1.8)
P 		487.1
(3)
P 		482.2
(2.9)
P 		274.3
(-0.2)
P 		143.3
(-2.2)
P 		92.3
(-3)
P 		395
avr 232.5
(-1.5) 		564.4
(3) 		472.4
(1.8) 		351.6
(0.1) 		241.2
(-1.3) 		118.5
(-3) 		446
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 62.8
(0.8)
P 		95.2
(3)
P 		61.5
(0.7)
P 		6.3
(-3)
A 		89
B 19.2
(-2.2)
P 		82.4
(3)
P 		60.6
(1.2)
P 		9.6
(-3)
A 		73
C 27.3
(-2.3)
P 		62
(0.4)
P 		94.4
(3)
P 		18.6
(-3)
P 		76
avr 36.4
(-0.8) 		79.9
(3) 		72.2
(2.3) 		11.5
(-3) 		68

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 223
1 2 3 4 5 6 range
A 44.1
(-2.3)
P 		241.1
(3)
P 		76.3
(-1.4)
P 		105.5
(-0.6)
P 		85.7
(-1.2)
P 		18.1
(-3)
P 		223
B 99.1
(-1.4)
P 		175.8
(3)
P 		142
(1.1)
P 		96.6
(-1.5)
P 		120.4
(-0.2)
P 		70.4
(-3)
P 		105
C 64.3
(-1.3)
P 		148.6
(3)
P 		122.7
(1.7)
P 		55.2
(-1.8)
P 		46.4
(-2.2)
P 		30.9
(-3)
P 		118
avr 69.2
(-1.8) 		188.5
(3) 		113.7
(-0) 		85.8
(-1.1) 		84.2
(-1.2) 		39.8
(-3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185601_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5543
Sequence Type Exemplar sequence
Representative Public ID F45D11.4 NCBI
Target Description F45D11.4 /REP_DB=WormBase Gene ID /WP=CE23738 /TR=Q9N5T1 /GB=AAF39818.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061487(11), NM_061485(11), NM_061483(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061487 NCBI Caenorhabditis elegans F45D11.2 (F45D11.2) mRNA, complete cds. 11/11 A 
NM_061485 NCBI Caenorhabditis elegans F45D11.3 (F45D11.3) mRNA, complete cds. 11/11 A 
NM_061483 NCBI Caenorhabditis elegans F45D11.4 (F45D11.4) mRNA, complete cds. 11/11 A 
SNAP00000019559 ENSEMBL cdna:SNAP chromosome:CEL140:II:1008238:1009163:1 11/11 None
SNAP00000019562 ENSEMBL cdna:SNAP chromosome:CEL140:II:1014066:1014991:1 11/11 None
SNAP00000019565 ENSEMBL cdna:SNAP chromosome:CEL140:II:1019884:1020809:1 11/11 None
GENEFINDER00000019571 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1007798:1009163:1 11/11 None
GENEFINDER00000019576 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1019444:1021280:1 11/11 None
GENEFINDER00000019579 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1013626:1014991:1 11/11 None
F45D11.4 ENSEMBL cdna:known chromosome:CEL140:II:1007798:1009042:1 gene:F45D11.4 11/11 A 
F45D11.3 ENSEMBL cdna:known chromosome:CEL140:II:1013626:1014991:1 gene:F45D11.3 11/11 A 
F45D11.2 ENSEMBL cdna:known chromosome:CEL140:II:1019444:1020809:1 gene:F45D11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1007796-1009041(+) 100.0 100.0
chrII:1013624-1014869(+) 100.0 100.0
chrII:1019442-1020687(+) 100.0 100.0
Public Domain and Genome References
Gene Title


Ensembl F45D11.4
F45D11.3
F45D11.2
Entrez Gene 185780 Entrez gene
185781 Entrez gene
185782 Entrez gene
SwissProt Q9N2L5 EMBL-EBI
Q9N5T1 EMBL-EBI
WormBase CE23737 Wormbase
CE23737 Wormbase
CE23738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF39817 Hypothetical protein F45D11.3 [Caenorhabditis elegans] gb|AAF39816.1| Hypothetical protein F45D11.2 [Caenorhabditis elegans] ref|NP_493886.1| F45D11.3 [Caenorhabditis elegans] ref|NP_493888.1| F45D11.2 [Caenorhabditis elegans] 0.0
blast AAF39818 Hypothetical protein F45D11.4 [Caenorhabditis elegans] ref|NP_493884.1| F45D11.4 [Caenorhabditis elegans] 0.0
blast AAF39817 Hypothetical protein F45D11.3 [Caenorhabditis elegans] gb|AAF39816.1| Hypothetical protein F45D11.2 [Caenorhabditis elegans] ref|NP_493886.1| F45D11.3 [Caenorhabditis elegans] ref|NP_493888.1| F45D11.2 [Caenorhabditis elegans] 1.0E-180
blast AAF39818 Hypothetical protein F45D11.4 [Caenorhabditis elegans] ref|NP_493884.1| F45D11.4 [Caenorhabditis elegans] 1.0E-174
Protein Domains
Database ID Description E-Value
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 9.8E-9
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.0E-126
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 1.2E-117
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 9.7E-7
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 4.8E-7
Pfam IPR007767 EMBL-EBI Protein of unknown function DUF684 3.0E-6
Sequence
Target Sequence 
>C. ELEGANS:185601_S_AT
gggagaggagcttccttcaaaagcaacattcgaaaagtggaaagacgtgctcaatagcac
actttcacaattcttgatgttggaatgcttcgctacgggacttcttcatccagaagacaa
tagtgacagtaagaaaatcatggaaaagttgacttactacgatactctattcaaacaatg
ggagaatctttatttgaacgacataccatactggccgaaactcaaaaagtacgttgagag
aattcaaggagaaggatcgtttgacagggacgaagacatggccactgagctcttaaaagg
attcgagaccattttcacaaatgacaacttctatatgtttgtgttcgccagagacattca
ctacgagattcacgttgtaaaacccgaaatggtgttcatctcgaagaatatcggaaagtt
cgacgtcatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGAGAGGAGCTTCCTTCAAAAGCA 709 493 360 Antisense
GGACTTCTTCATCCAGAAGACAATA 487 525 457 Antisense
GTTGACTTACTACGATACTCTATTC 12 439 507 Antisense
GGGAGAATCTTTATTTGAACGACAT 426 495 539 Antisense
TGAACGACATACCATACTGGCCGAA 472 573 554 Antisense
GAAGACATGGCCACTGAGCTCTTAA 358 339 631 Antisense
ACTTCTATATGTTTGTGTTCGCCAG 677 103 686 Antisense
GTGTTCGCCAGAGACATTCACTACG 616 485 700 Antisense
TACGAGATTCACGTTGTAAAACCCG 324 647 721 Antisense
CCCGAAATGGTGTTCATCTCGAAGA 223 261 742 Antisense
GAATATCGGAAAGTTCGACGTCATC 430 325 765 Antisense
Sequence Source Affymetrix Proprietary Database