[Home] | [Total List]

[185600_at]

Description R08F11.1 /REP_DB=WormBase Gene ID /WP=CE12580 /TR=O01893 /GB=AAB54243.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 07      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 39.2
(1.3)
A 		8.3
(-3)
A 		29.6
(-0.1)
A 		51.7
(3)
A 		43
B 49.1
(3)
A 		4.9
(-3)
A 		19.3
(-1)
A 		21.9
(-0.7)
A 		44
C 31.6
(2.4)
A 		3.4
(-3)
A 		4.5
(-2.8)
A 		34.7
(3)
A 		31
avr 40
(3) 		5.5
(-3) 		17.8
(-0.9) 		36.1
(2.3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 4.6
(-3)
A 		24.7
(2.2)
A 		27.7
(3)
A 		21.7
(1.4)
A 		8.9
(-1.9)
A 		18.5
(0.6)
A 		23
B 14.4
(3)
A 		10.9
(1.1)
A 		3.2
(-3)
A 		11.6
(1.5)
A 		6.9
(-1)
A 		6.2
(-1.4)
A 		11
C 6.9
(-1.3)
A 		16.1
(2)
A 		18.8
(3)
A 		3.2
(-2.7)
A 		2.3
(-3)
A 		13.6
(1.1)
A 		17
avr 8.6
(-1.6) 		17.2
(3) 		16.6
(2.7) 		12.2
(0.3) 		6
(-3) 		12.8
(0.6) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.3
(3)
A 		1.8
(-3)
A 		7.7
(-0.2)
A 		7.6
(-0.2)
A 		13
B 15.7
(3)
A 		1.2
(-3)
A 		4.5
(-1.6)
A 		4.7
(-1.6)
A 		15
C 10.5
(3)
A 		1
(-3)
A 		1.6
(-2.6)
A 		5.9
(0.1)
A 		10
avr 13.5
(3) 		1.3
(-3) 		4.6
(-1.4) 		6.1
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.8
(-3)
A 		8.8
(3)
A 		6
(0.9)
A 		5.5
(0.5)
A 		2.7
(-1.6)
A 		4.5
(-0.2)
A 		8
B 5
(3)
A 		3.6
(1)
A 		0.8
(-3)
A 		3.1
(0.3)
A 		2.8
(-0.1)
A 		2.3
(-0.9)
A 		4
C 2.6
(-0.3)
A 		4.9
(3)
A 		4.8
(2.9)
A 		0.7
(-3)
A 		0.8
(-2.9)
A 		4.6
(2.6)
A 		4
avr 2.8
(-1.9) 		5.8
(3) 		3.9
(-0.1) 		3.1
(-1.4) 		2.1
(-3) 		3.8
(-0.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185600_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15134
Sequence Type Exemplar sequence
Representative Public ID R08F11.1 NCBI
Target Description R08F11.1 /REP_DB=WormBase Gene ID /WP=CE12580 /TR=O01893 /GB=AAB54243.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071646 NCBI Caenorhabditis elegans R08F11.1 (R08F11.1) mRNA, complete cds. 11/11 None
SNAP00000031718 ENSEMBL cdna:SNAP chromosome:CEL140:V:3777642:3784027:-1 11/11 None
GENEFINDER00000031725 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3777642:3784027:-1 11/11 None
R08F11.1 ENSEMBL cdna:known chromosome:CEL140:V:3777199:3784486:-1 gene:R08F11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3778937-3784486(-) 90.47 90.77
Public Domain and Genome References
Gene Title
Ensembl R08F11.1
Entrez Gene 187703 Entrez gene
SwissProt O01893 EMBL-EBI
WormBase CE12580 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54243 Hypothetical protein R08F11.1 [Caenorhabditis elegans] ref|NP_504047.1| R08F11.1 [Caenorhabditis elegans] 0.0
blast CAE65467 Hypothetical protein CBG10433 [Caenorhabditis briggsae] 0.0
blast CAC48128 Hypothetical protein Y105E8A.10c [Caenorhabditis elegans] ref|NP_001021682.1| Y105E8A.10c [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR006775 EMBL-EBI Protein of unknown function DUF608 1.0E-126
Pfam IPR006775 EMBL-EBI Protein of unknown function DUF608 1.0E-126
Pfam IPR006775 EMBL-EBI Protein of unknown function DUF608 6.7E-47
Pfam IPR006775 EMBL-EBI Protein of unknown function DUF608 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504047.1 1 94-116
R08F11.1 1 94-116
Sequence
Target Sequence 
>C. ELEGANS:185600_AT
gaagctcgaaatggcctatgacgcgtacatcgggaagctgtggaacgggacatttttcaa
gtttgacgagctcccggaaaactcgaagatcgtgatggccgatcagttgtgtggattctg
ggcgatgacggcaatggatgagcctgttcagatatccaaggacaagatgaagtcggcgct
ggacacgattttcaagtacaacgttcaaatgtataataatggaagatgtggagctgtgaa
tgggtatttaaccagcgaacgcgtcgacggatccagcattcagagtgaagaagtatgggc
tggcatcacttatgcactctccgcgatgatgattga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCGAAATGGCCTATGACGCG 314 343 2079 Antisense
GACGCGTACATCGGGAAGCTGTGGA 561 379 2098 Antisense
TTTCAAGTTTGACGAGCTCCCGGAA 252 667 2133 Antisense
GATGGCCGATCAGTTGTGTGGATTC 197 407 2172 Antisense
GTGTGGATTCTGGGCGATGACGGCA 643 487 2187 Antisense
GAGCCTGTTCAGATATCCAAGGACA 621 385 2218 Antisense
GAAGTCGGCGCTGGACACGATTTTC 90 337 2247 Antisense
TAACCAGCGAACGCGTCGACGGATC 323 627 2327 Antisense
TCGACGGATCCAGCATTCAGAGTGA 628 601 2342 Antisense
ATGGGCTGGCATCACTTATGCACTC 123 51 2373 Antisense
ATGCACTCTCCGCGATGATGATTGA 3 45 2390 Antisense
Sequence Source Affymetrix Proprietary Database