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[185597_at]

Description M01G12.10 /REP_DB=WormBase Gene ID /WP=CE18073 /TR=O62307 /GB=CAB04609.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 119
1 2 3 4 range
A 67.4
(-2.4)
A 		62.7
(-3)
A 		71.6
(-1.9)
A 		111.7
(3)
A 		49
B 70.1
(-1.2)
A 		63.9
(-3)
A 		71.7
(-0.7)
A 		84.1
(3)
A 		20
C 10.2
(-3)
A 		58.5
(-0.6)
A 		65.6
(-0.2)
A 		128.7
(3)
A 		119
avr 49.2
(-3) 		61.7
(-1.7) 		69.6
(-0.9) 		108.2
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 14.7
(-2.3)
A 		50.6
(-0.1)
A 		25
(-1.7)
A 		99.3
(3)
A 		21.6
(-1.9)
A 		4.4
(-3)
A 		95
B 49.8
(3)
A 		4.2
(-2.9)
A 		9.9
(-2.2)
A 		29.4
(0.3)
A 		35.8
(1.2)
A 		3.7
(-3)
A 		46
C 24.1
(0.3)
A 		31
(1.4)
A 		42
(3)
A 		1.5
(-3)
A 		38.1
(2.4)
A 		27.4
(0.8)
A 		41
avr 29.5
(0.4) 		28.6
(0.2) 		25.6
(-0.4) 		43.4
(3) 		31.8
(0.8) 		11.8
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 24.5
(3)
A 		13.6
(-3)
A 		18.7
(-0.2)
A 		16.4
(-1.5)
A 		11
B 22.3
(3)
A 		15.8
(-3)
A 		16.6
(-2.3)
A 		17.9
(-1.1)
A 		7
C 3.4
(-3)
A 		16.8
(1.1)
A 		22.9
(3)
A 		21.7
(2.6)
A 		20
avr 16.7
(-1.1) 		15.4
(-3) 		19.4
(3) 		18.7
(2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 2.7
(-2.6)
A 		18
(1.2)
A 		5.4
(-1.9)
A 		25.2
(3)
A 		6.5
(-1.7)
A 		1.1
(-3)
A 		24
B 17.3
(3)
A 		1.4
(-3)
A 		2.4
(-2.6)
A 		7.8
(-0.6)
A 		14.5
(1.9)
A 		1.4
(-3)
A 		16
C 8.9
(1.3)
A 		9.5
(1.6)
A 		10.7
(2.2)
A 		0.3
(-3)
A 		12.3
(3)
A 		9.2
(1.5)
A 		12
avr 9.6
(1.8) 		9.6
(1.8) 		6.2
(-1.1) 		11.1
(3) 		11.1
(3) 		3.9
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185597_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.766
Sequence Type Exemplar sequence
Representative Public ID M01G12.10 NCBI
Target Description M01G12.10 /REP_DB=WormBase Gene ID /WP=CE18073 /TR=O62307 /GB=CAB04609.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060662(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060662 NCBI Caenorhabditis elegans M01G12.10 (M01G12.10) mRNA, complete cds. 11/11 None
SNAP00000024226 ENSEMBL cdna:SNAP chromosome:CEL140:I:12127233:12133708:1 11/11 None
GENEFINDER00000024235 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:12127233:12127708:1 11/11 None
M01G12.10 ENSEMBL cdna:known chromosome:CEL140:I:12127233:12127708:1 gene:M01G12.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12127163-12127639(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M01G12.10
Entrez Gene 187386 Entrez gene
SwissProt O62307 EMBL-EBI
WormBase CE18073 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04613 Hypothetical protein M01G12.4 [Caenorhabditis elegans] ref|NP_493064.1| Serpentine Receptor, class W family member (srw-111) [Caenorhabditis elegans] 0.0
blast CAB04609 Hypothetical protein M01G12.10 [Caenorhabditis elegans] ref|NP_493063.1| M01G12.10 [Caenorhabditis elegans] 2.0E-70
blast CAB04615 Hypothetical protein M01G12.6 [Caenorhabditis elegans] ref|NP_493062.1| M01G12.6 [Caenorhabditis elegans] 1.0E-66
blast CAB03508 Hypothetical protein ZK1037.9 [Caenorhabditis elegans] ref|NP_506802.1| Serpentine Receptor, class W family member (srw-113) [Caenorhabditis elegans] 1.0E-65
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000024226 7 176-198,210-232,242-261,300-322,355-377,405-427,442-464
Sequence
Target Sequence 
>C. ELEGANS:185597_AT
ctgccacctgcactgcaaaacttgaacttcgtaaacttgctttctttgacaacaaaaagg
gaaagcagatcaagatgtgtgaaactgtatttgaaattggctttagaactccggtcagca
aagaagaggagtggattgtaaataaggaagtttcaaatgcacttgatgcagctggagaga
agcttgtgactgatttcaaggctacctaccactttagtctggattacgaaaaaattaaag
tttcggtccgtcttgcaatgtcccactcttttacgcacaaagataaaataccagtttacc
caaacacgcggaaacaagtgttccaggtctacgccgtatgtggcaagcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCCACCTGCACTGCAAAACTTGA 349 237 59 Antisense
GAACTTCGTAAACTTGCTTTCTTTG 472 347 82 Antisense
AAATTGGCTTTAGAACTCCGGTCAG 656 93 152 Antisense
TTAGAACTCCGGTCAGCAAAGAAGA 112 681 161 Antisense
CAAATGCACTTGATGCAGCTGGAGA 704 191 212 Antisense
GTGACTGATTTCAAGGCTACCTACC 494 481 244 Antisense
GGCTACCTACCACTTTAGTCTGGAT 421 537 258 Antisense
AAGTTTCGGTCCGTCTTGCAATGTC 51 157 296 Antisense
GTCCCACTCTTTTACGCACAAAGAT 647 475 318 Antisense
AAACAAGTGTTCCAGGTCTACGCCG 269 129 370 Antisense
GGTCTACGCCGTATGTGGCAAGCAT 73 503 384 Antisense
Sequence Source Affymetrix Proprietary Database