[Home] | [Total List]

[185596_s_at]

Description T25E12.4B /REP_DB=WormBase Gene ID /WP=CE18283 /TR=O62166 /GB=CAB07477.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 26      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 90      6grp_total > 27      4grp_total > 22      6grp_highest_sub > Cu      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 259
1 2 3 4 range
A 380.4
(1.8)
P 		246.1
(-1.6)
P 		194.1
(-3)
P 		425
(3)
P 		231
B 357.6
(3)
P 		243.7
(-2.6)
P 		236.3
(-3)
P 		251
(-2.3)
P 		121
C 416.5
(2.1)
P 		272.6
(-1.3)
P 		201
(-3)
P 		452.9
(3)
P 		252
avr 384.8
(3) 		254.1
(-1.5) 		210.5
(-3) 		376.3
(2.7) 		174

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 308
1 2 3 4 5 6 range
A 150.5
(-1.4)
P 		302.8
(3)
P 		115.2
(-2.4)
P 		169.7
(-0.8)
P 		92.9
(-3)
P 		184.6
(-0.4)
P 		210
B 150
(3)
P 		138.1
(1.6)
P 		127.5
(0.3)
P 		99.4
(-3)
P 		121.1
(-0.4)
P 		133.5
(1)
P 		51
C 401.3
(3)
P 		164.9
(-2.3)
P 		136.6
(-3)
P 		135.3
(-3)
P 		195.6
(-1.6)
P 		183.1
(-1.9)
P 		266
avr 233.9
(3) 		201.9
(1.2) 		126.4
(-3) 		134.8
(-2.5) 		136.5
(-2.4) 		167.1
(-0.7) 		108
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 138.5
(3)
P 		53.4
(-2.8)
P 		50.7
(-3)
P 		62.2
(-2.2)
P 		88
B 114
(3)
P 		60.2
(-2.3)
P 		54.7
(-2.9)
P 		53.5
(-3)
P 		61
C 137.9
(3)
P 		78.4
(-2.3)
P 		70.1
(-3)
P 		76.4
(-2.4)
P 		68
avr 130.1
(3) 		64
(-2.5) 		58.5
(-3) 		64
(-2.5) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 27.7
(-2.8)
P 		107.7
(3)
P 		25.1
(-3)
P 		43
(-1.7)
P 		28
(-2.8)
P 		44.9
(-1.6)
P 		83
B 52.2
(3)
P 		46
(1.6)
P 		31
(-1.9)
P 		26.3
(-3)
P 		49.2
(2.3)
P 		49.8
(2.4)
P 		26
C 148.7
(3)
P 		50.3
(-1.9)
P 		34.8
(-2.6)
P 		27.2
(-3)
P 		63.3
(-1.2)
P 		61.3
(-1.3)
P 		122
avr 76.2
(3) 		68
(1.9) 		30.3
(-3) 		32.2
(-2.8) 		46.8
(-0.8) 		52
(-0.2) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185596_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14415
Sequence Type Exemplar sequence
Representative Public ID T25E12.4B NCBI
Target Description T25E12.4B /REP_DB=WormBase Gene ID /WP=CE18283 /TR=O62166 /GB=CAB07477.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074838(11), NM_074839(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074838 NCBI Caenorhabditis elegans T25E12.4a (T25E12.4) mRNA, complete cds. 11/11 A 
NM_074839 NCBI Caenorhabditis elegans T25E12.4b (T25E12.4) mRNA, complete cds. 11/11 A 
SNAP00000025303 ENSEMBL cdna:SNAP chromosome:CEL140:V:16787338:16788109:1 11/11 None
GENEFINDER00000025306 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16787338:16788109:1 11/11 None
T25E12.4a ENSEMBL cdna:known chromosome:CEL140:V:16750140:16790995:1 gene:T25E12.4 11/11 A 
T25E12.4b ENSEMBL cdna:known chromosome:CEL140:V:16787329:16788132:1 gene:T25E12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16787337-16788132(+) 100.0 100.0
Public Domain and Genome References
Ensembl T25E12.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07478 Hypothetical protein T25E12.4a [Caenorhabditis elegans] emb|CAB04830.1| Hypothetical protein T25E12.4a [Caenorhabditis elegans] emb|CAA16519.1| Hypothetical protein T25E12.4a [Caenorhabditis elegans] emb|CAA16430.1| Hypothetical protein T25E12.4a [Caenorhabditis elegans] ref|NP_507239.1| T25E12.4a [Caenorhabditis elegans] 0.0
blast NP_005804 protein kinase D3 [Homo sapiens] gb|AAY14817.1| unknown [Homo sapiens] sp|O94806|KPCN_HUMAN Protein kinase C, nu type (nPKC-nu) (Protein kinase EPK2) dbj|BAA36514.1| serine/threonine kinase [Homo sapiens] 0.0
blast XP_540151 PREDICTED: similar to Protein kinase C, nu type (nPKC-nu) (Protein kinase EPK2) [Canis familiaris] 0.0
blast CAB07477 Hypothetical protein T25E12.4b [Caenorhabditis elegans] ref|NP_507240.1| T25E12.4b [Caenorhabditis elegans] 5.0E-99
blast CAB07477 Hypothetical protein T25E12.4b [Caenorhabditis elegans] ref|NP_507240.1| T25E12.4b [Caenorhabditis elegans] 3.0E-94
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 8.0E-60
hanks 1.2.18 AGC group; AGC I Diacylglycerol-activated/phospholipid-dependent protein kinase C (PKC) family; PKCm 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 3.2E-17
Pfam IPR002219 EMBL-EBI Protein kinase C, phorbol ester/diacylglycerol binding 7.8E-21
Pfam IPR000719 EMBL-EBI Protein kinase 2.8E-80
Pfam IPR001849 EMBL-EBI Pleckstrin-like 3.5E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507239.1 1 1068-1090
T25E12.4a 1 1068-1090
Sequence
Target Sequence 
>C. ELEGANS:185596_S_AT
cggttcaccatctgacgagaagggatcctccctggatgctcagtcatggacgacggcgat
tcagtccgcactgatgccagtaacaccgcaaagttcggtggttggcggaaaacgaattga
taagctgaaagtgccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGGTTCACCATCTGACGAGAAGGGA 99 245 510 Antisense
CGAGAAGGGATCCTCCCTGGATGCT 254 251 525 Antisense
CTCCCTGGATGCTCAGTCATGGACG 88 235 537 Antisense
GGATGCTCAGTCATGGACGACGGCG 268 513 543 Antisense
CTCAGTCATGGACGACGGCGATTCA 60 211 548 Antisense
CGATTCAGTCCGCACTGATGCCAGT 3 249 566 Antisense
TCCGCACTGATGCCAGTAACACCGC 701 593 574 Antisense
GATGCCAGTAACACCGCAAAGTTCG 229 413 582 Antisense
ACACCGCAAAGTTCGGTGGTTGGCG 225 109 592 Antisense
GGTGGTTGGCGGAAAACGAATTGAT 553 493 606 Antisense
ACGAATTGATAAGCTGAAAGTGCCG 642 89 621 Antisense
Sequence Source Affymetrix Proprietary Database