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[185594_at]

Description C36C5.15 /REP_DB=WormBase Gene ID /WP=CE08604 /TR=O16410 /GB=AAB65922.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 10      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 4.3
(-3)
A 		7
(-1)
A 		5.7
(-2)
A 		12.6
(3)
A 		8
B 3
(-3)
A 		4.4
(-2.4)
A 		3.4
(-2.8)
A 		17
(3)
A 		14
C 3.7
(-2.9)
A 		10
(-2.3)
A 		2.6
(-3)
A 		69.3
(3)
A 		67
avr 3.7
(-3) 		7.1
(-2.3) 		3.9
(-3) 		33
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.6
(-0.4)
A 		5.8
(3)
A 		5.1
(1.9)
A 		1.9
(-3)
A 		2.5
(-2.1)
A 		5.6
(2.7)
A 		4
B 14.8
(3)
A 		7.8
(-0.3)
A 		5.7
(-1.2)
A 		5
(-1.6)
A 		3.6
(-2.2)
A 		1.9
(-3)
A 		13
C 2.8
(-3)
A 		7.4
(3)
A 		6
(1.2)
A 		5.8
(0.9)
A 		3.9
(-1.6)
A 		4.7
(-0.5)
A 		5
avr 7.1
(3) 		7
(2.8) 		5.6
(0.6) 		4.2
(-1.6) 		3.3
(-3) 		4.1
(-1.7) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 1.6
(-1)
A 		1.5
(-3)
A 		1.5
(-3)
A 		1.8
(3)
A 		0
B 0.9
(-2.8)
A 		1.1
(-2.4)
A 		0.8
(-3)
A 		3.6
(3)
A 		3
C 1.2
(-2.8)
A 		2.9
(-1.9)
A 		0.9
(-3)
A 		11.7
(3)
A 		11
avr 1.2
(-2.9) 		1.8
(-2.1) 		1.1
(-3) 		5.7
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 0.7
(-2.3)
A 		2.1
(3)
A 		1.1
(-0.8)
A 		0.5
(-3)
A 		0.7
(-2.3)
A 		1.4
(0.4)
A 		2
B 5.2
(3)
A 		2.6
(-0.5)
A 		1.4
(-2.1)
A 		1.3
(-2.2)
A 		1.5
(-1.9)
A 		0.7
(-3)
A 		5
C 1
(-3)
A 		2.3
(3)
A 		1.5
(-0.7)
A 		1.2
(-2.1)
A 		1.3
(-1.6)
A 		1.6
(-0.2)
A 		1
avr 2.3
(3) 		2.3
(3) 		1.3
(-1.6) 		1
(-3) 		1.2
(-2.1) 		1.2
(-2.1) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15249
Sequence Type Exemplar sequence
Representative Public ID C36C5.15 NCBI
Target Description C36C5.15 /REP_DB=WormBase Gene ID /WP=CE08604 /TR=O16410 /GB=AAB65922.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071472 NCBI Caenorhabditis elegans C36C5.15 (C36C5.15) mRNA, complete cds. 11/11 None
SNAP00000036662 ENSEMBL cdna:SNAP chromosome:CEL140:V:3167795:3168577:-1 11/11 None
GENEFINDER00000036675 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3167795:3168577:-1 11/11 None
C36C5.15 ENSEMBL cdna:known chromosome:CEL140:V:3167795:3168577:-1 gene:C36C5.15 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3167794-3168577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C36C5.15
Entrez Gene 183271 Entrez gene
SwissProt O16410 EMBL-EBI
WormBase CE08604 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503873 C36C5.15 [Caenorhabditis elegans] gb|AAB65922.1| Hypothetical protein C36C5.15 [Caenorhabditis elegans] 1.0E-102
blast NP_503871 C36C5.14 [Caenorhabditis elegans] gb|AAB65923.1| Hypothetical protein C36C5.14 [Caenorhabditis elegans] 7.0E-72
blast T25496 hypothetical protein C03G6.5 - Caenorhabditis elegans 2.0E-56
Protein Domains
Database ID Description E-Value
Pfam IPR002542 EMBL-EBI Protein of unknown function DUF19 3.8E-99
Sequence
Target Sequence 
>C. ELEGANS:185594_AT
agacttactcaagcttgtcctcatcggtactgtgttattgggagtggctcatggagcaag
tctagctgctgcatcggcgacggactcgaactgcactacgacaaatacatatgatgtagt
taggtgtggttcgattatgaaagacttcgtgaaggaaattgatgagctcgacatgaacga
taaggatgaactaaaagaattcaagaaatcgtgtgatactgctctgagctgtttgaacgg
ttatgcatgcgtcgcaaacaggaaggatgcaatgaatcaatatattgagaatatcaaaaa
ttactgtgaggctgttcagtacgtccactttgagttttccaaatgtggtgataaattgaa
tgcaaaaaaatcccaatgctatgatgactgggacccaattccaaacaaaactcatttgga
aacagatgcggcaaaaattgagaaaattaagaatgatgcttgtaagacatatttcggaaa
ggatgactgcatgaagaaagaagttacggaaacttgcggcaaagaagagtgggactccct
ccgcaagcaatttgtactgatttctcgaggacttgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGACTTACTCAAGCTTGTCCTCATC 604 71 18 Antisense
TTGTCCTCATCGGTACTGTGTTATT 268 709 32 Antisense
TGGAGCAAGTCTAGCTGCTGCATCG 248 549 69 Antisense
CGGACTCGAACTGCACTACGACAAA 687 241 98 Antisense
ATCGTGTGATACTGCTCTGAGCTGT 540 35 225 Antisense
GAACGGTTATGCATGCGTCGCAAAC 704 347 252 Antisense
CTGTGAGGCTGTTCAGTACGTCCAC 112 241 321 Antisense
CAGTACGTCCACTTTGAGTTTTCCA 117 205 334 Antisense
AAAGAAGAGTGGGACTCCCTCCGCA 59 121 538 Antisense
TCCCTCCGCAAGCAATTTGTACTGA 21 599 553 Antisense
TGTACTGATTTCTCGAGGACTTGTC 36 559 570 Antisense
Sequence Source Affymetrix Proprietary Database