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[185593_at]

Description H23N18.5 /REP_DB=WormBase Gene ID /WP=CE20987 /TR=Q9TXZ7 /GB=AAD14734.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 83      4grp_total > 48      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6008
1 2 3 4 range
A 7.5
(-3)
A 		3131.9
(0.1)
P 		5971
(3)
P 		6.3
(-3)
A 		5965
B 4.8
(-3)
A 		3079.8
(0.1)
P 		6012.3
(3)
P 		10.2
(-3)
A 		6008
C 3.9
(-3)
A 		2975.3
(0.3)
P 		5486.8
(3)
P 		9.2
(-3)
A 		5483
avr 5.4
(-3) 		3062.3
(0.2) 		5823.4
(3) 		8.6
(-3) 		5818

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12348
1 2 3 4 5 6 range
A 10.5
(-3)
A 		3308.2
(-1.3)
P 		4245.4
(-0.9)
P 		11882
(3)
P 		10337.5
(2.2)
P 		3122
(-1.4)
P 		11872
B 9.3
(-3)
A 		3706.2
(-1.2)
P 		3350.6
(-1.4)
P 		10897.3
(2.3)
P 		12353.5
(3)
P 		3965.9
(-1.1)
P 		12344
C 5.8
(-3)
A 		3870.8
(-1)
P 		3392.3
(-1.3)
P 		11754.1
(3)
P 		10804.4
(2.5)
P 		4219.7
(-0.8)
P 		11748
avr 8.5
(-3) 		3628.4
(-1.1) 		3662.8
(-1.1) 		11511.1
(3) 		11165.1
(2.8) 		3769.2
(-1) 		11503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1911
1 2 3 4 range
A 2.7
(-3)
A 		679.8
(-0.4)
P 		1560.9
(3)
P 		0.9
(-3)
A 		1560
B 1.5
(-3)
A 		760.6
(0.3)
P 		1393.2
(3)
P 		2.2
(-3)
A 		1392
C 1.3
(-3)
A 		855.4
(-0.3)
P 		1912.3
(3)
P 		1.6
(-3)
A 		1911
avr 1.8
(-3) 		765.3
(-0.2) 		1622.1
(3) 		1.6
(-3) 		1621

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5017
1 2 3 4 5 6 range
A 1.9
(-3)
A 		1176.6
(-0.7)
P 		924.6
(-1.2)
P 		3013.6
(2.8)
P 		3119.4
(3)
P 		760.1
(-1.5)
P 		3118
B 3.3
(-3)
A 		1233.6
(-1.5)
P 		813.6
(-2)
P 		2886.3
(0.4)
P 		5019
(3)
P 		1478.9
(-1.2)
P 		5016
C 2.2
(-3)
A 		1181.1
(-1)
P 		863.4
(-1.5)
P 		2363.8
(1.1)
P 		3496.2
(3)
P 		1412.6
(-0.6)
P 		3494
avr 2.5
(-3) 		1197.1
(-1.2) 		867.2
(-1.7) 		2754.6
(1.3) 		3878.2
(3) 		1217.2
(-1.1) 		3876
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14901
Sequence Type Exemplar sequence
Representative Public ID H23N18.5 NCBI
Target Description H23N18.5 /REP_DB=WormBase Gene ID /WP=CE20987 /TR=Q9TXZ7 /GB=AAD14734.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071917(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071917 NCBI Caenorhabditis elegans H23N18.5 (H23N18.5) mRNA, complete cds. 11/11 None
SNAP00000039204 ENSEMBL cdna:SNAP chromosome:CEL140:V:4911599:4912194:-1 10/11 None
GENEFINDER00000039209 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4911599:4912194:-1 10/11 None
H23N18.5 ENSEMBL cdna:known chromosome:CEL140:V:4911599:4912468:-1 gene:H23N18.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4911598-4912468(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H23N18.5
Entrez Gene 186770 Entrez gene
SwissProt Q9TXZ7 EMBL-EBI
WormBase CE20987 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
16042 lipid catabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4623 phospholipase A2 activity inferred from electronic annotation QuickGO AmiGO
5509 calcium ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAD14734 Hypothetical protein H23N18.5 [Caenorhabditis elegans] ref|NP_504318.1| H23N18.5 [Caenorhabditis elegans] 3.0E-81
blast AAD14734 Hypothetical protein H23N18.5 [Caenorhabditis elegans] ref|NP_504318.1| H23N18.5 [Caenorhabditis elegans] 3.0E-60
blast CAE64228 Hypothetical protein CBG08862 [Caenorhabditis briggsae] 1.0E-51
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504318.1 1 34-56
H23N18.5 1 34-56
Sequence
Target Sequence 
>C. ELEGANS:185593_AT
gcgtaatccatcaaatagccatccaaaaagattcggatgggggataaaaaacacaatgaa
cagctcacttttggcaattcttgtctccctatgtgctataactatggtgtcagctcgttt
ttcatgcggacacgatccaattcagtctggatttgcggagcttttgattaagaatgattg
caagggaagacttaacaaagtcgacgcctgctgtgctcaacatacagcctgttacgccaa
gaagactccgagaaatgtttgcgatgaaggattctgcaagtgtgccaagaacgctgccaa
gagtttgccactctgcacatttcaaatgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGTAATCCATCAAATAGCCATCCA 552 291 57 Antisense
TCACTTTTGGCAATTCTTGTCTCCC 604 627 121 Antisense
TTGTCTCCCTATGTGCTATAACTAT 567 707 137 Antisense
GTGTCAGCTCGTTTTTCATGCGGAC 270 487 163 Antisense
GCGGACACGATCCAATTCAGTCTGG 319 293 182 Antisense
TTCAGTCTGGATTTGCGGAGCTTTT 685 685 197 Antisense
TTAACAAAGTCGACGCCTGCTGTGC 400 681 248 Antisense
ACAGCCTGTTACGCCAAGAAGACTC 550 107 280 Antisense
CAAGTGTGCCAAGAACGCTGCCAAG 612 181 333 Antisense
GAACGCTGCCAAGAGTTTGCCACTC 91 347 345 Antisense
TTGCCACTCTGCACATTTCAAATGG 709 701 361 Antisense
Sequence Source Affymetrix Proprietary Database