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[185592_s_at] 7TM chemoreceptor, srx family /// 7TM chemoreceptor, srx family

Description R13D11.9 /REP_DB=WormBase Gene ID /WP=CE20029 /TR=O17017 /GB=AAB69948.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 26      6grp_cgc > 76      6grp_cgc_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 24.1
(-3)
A 		50.1
(0.1)
A 		30.3
(-2.3)
A 		75
(3)
A 		51
B 23.4
(-0.9)
A 		50.5
(3)
A 		8.7
(-3)
A 		30.8
(0.2)
A 		42
C 20.6
(-3)
A 		22
(-2.7)
A 		29
(-1.2)
A 		48.4
(3)
A 		28
avr 22.7
(-3) 		40.9
(0.8) 		22.7
(-3) 		51.4
(3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 28.7
(1)
A 		6
(-3)
A 		32.6
(1.7)
A 		37.6
(2.6)
A 		39.7
(3)
A 		6
(-3)
A 		34
B 17.1
(-0.7)
A 		22.1
(0.2)
A 		5.4
(-2.7)
A 		23.5
(0.4)
A 		3.8
(-3)
A 		38.1
(3)
A 		34
C 7.1
(-3)
A 		23.2
(-0)
A 		39.7
(3)
A 		8.9
(-2.7)
A 		15.8
(-1.4)
A 		16
(-1.4)
A 		33
avr 17.6
(-2.7) 		17.1
(-3) 		25.9
(3) 		23.3
(1.2) 		19.8
(-1.2) 		20
(-1) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 8.8
(-1.3)
A 		10.9
(2.8)
A 		7.9
(-3)
A 		11
(3)
A 		3
B 7.5
(0.1)
A 		12.5
(3)
A 		2
(-3)
A 		6.6
(-0.4)
A 		11
C 6.8
(-2.2)
A 		6.3
(-3)
A 		10.1
(3)
A 		8.2
(-0)
A 		4
avr 7.7
(-1.1) 		9.9
(3) 		6.7
(-3) 		8.6
(0.6) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 5.3
(-0.8)
A 		2.1
(-2.7)
A 		7.1
(0.2)
A 		9.5
(1.6)
A 		12
(3)
A 		1.5
(-3)
A 		11
B 5.9
(-0.9)
A 		7.4
(-0.2)
A 		1.3
(-3)
A 		6.2
(-0.7)
A 		1.6
(-2.9)
A 		14.2
(3)
A 		13
C 2.6
(-2.4)
A 		7.1
(0.8)
A 		10.1
(3)
A 		1.8
(-3)
A 		5.1
(-0.6)
A 		5.3
(-0.5)
A 		8
avr 4.6
(-3) 		5.5
(-0.8) 		6.2
(1) 		5.8
(0) 		6.2
(1) 		7
(3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15219
Sequence Type Exemplar sequence
Representative Public ID R13D11.9 NCBI
Target Description R13D11.9 /REP_DB=WormBase Gene ID /WP=CE20029 /TR=O17017 /GB=AAB69948.2 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070932(11), NM_001028742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070932 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-32) (srx-32) mRNA, complete cds. 11/11 None
NM_001028742 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-31) (srx-31) mRNA, complete cds. 11/11 None
GENEFINDER00000012427 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:821198:824802:-1 11/11 None
R13D11.9 ENSEMBL cdna:known chromosome:CEL140:V:819378:820559:-1 gene:R13D11.9 11/11 None
F41H8.4 ENSEMBL cdna:known chromosome:CEL140:V:821673:822852:-1 gene:F41H8.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
F41H8.3 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:819315-820559(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
7TM chemoreceptor, srx family
Gene Symbol srx-31
srx-32
Ensembl R13D11.9
F41H8.4
Entrez Gene 185640 Entrez gene
187868 Entrez gene
SwissProt Q965G4 EMBL-EBI
O17017 EMBL-EBI
WormBase CE36439 Wormbase
CE36557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84528 Serpentine receptor, class x protein 31 [Caenorhabditis elegans] ref|NP_001023913.1| Serpentine Receptor, class X family member (srx-31) [Caenorhabditis elegans] 1.0E-163
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 1.0E-162
blast AAK84528 Serpentine receptor, class x protein 31 [Caenorhabditis elegans] ref|NP_001023913.1| Serpentine Receptor, class X family member (srx-31) [Caenorhabditis elegans] 1.0E-158
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 1.0E-158
blast AAK84528 Serpentine receptor, class x protein 31 [Caenorhabditis elegans] ref|NP_001023913.1| Serpentine Receptor, class X family member (srx-31) [Caenorhabditis elegans] 1.0E-120
blast NP_503333 Serpentine Receptor, class X family member (srx-32) [Caenorhabditis elegans] gb|AAB69948.3| Serpentine receptor, class x protein 32 [Caenorhabditis elegans] 1.0E-117
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503333.2 7 4-26,47-69,84-106,126-148,168-190,219-241,251-273
NP_001023913.1 7 4-26,47-69,84-106,126-148,168-190,227-244,248-270
R13D11.9 7 4-26,47-69,84-106,126-148,168-190,219-241,251-273
F41H8.4 7 4-26,47-69,84-106,126-148,168-190,227-244,248-270
GENEFINDER00000012427 9 4-26,47-64,79-101,122-144,154-176,197-219,239-261,298-315,319-341
Sequence
Target Sequence 
>C. ELEGANS:185592_S_AT
ttatcccacctaacgatcgcaatgaaccgattttgcgctatgtacattcagcatagatat
gaacgcattttcagcaaaacaaacacaatggtgctgagaaattatttgtgggtgttttcc
atcgctttttgcacatgctggtatgaaatatcgaaatgtttctttttctacgacactcaa
acttggacatttgagtttgagaattcagaattctgtgcaaccctaacctggttctctgac
tttattttcaatactgggcttataattctaactctgtttatgaacctcgtaacggcctac
aaaggaagaaagctatcaagagctctgattaatgcagctggcatggaagtttccaacgtc
ctacggaagcgagaatggaatttcgtgagacaggcgtgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATCCCACCTAACGATCGCAATGA 666 677 286 Antisense
GAACCGATTTTGCGCTATGTACATT 251 347 309 Antisense
ATTTGTGGGTGTTTTCCATCGCTTT 266 17 389 Antisense
CCATCGCTTTTTGCACATGCTGGTA 437 271 404 Antisense
AATGTTTCTTTTTCTACGACACTCA 241 163 440 Antisense
CTAACCTGGTTCTCTGACTTTATTT 308 205 508 Antisense
ACTGGGCTTATAATTCTAACTCTGT 500 97 538 Antisense
TTATGAACCTCGTAACGGCCTACAA 165 681 563 Antisense
ATGCAGCTGGCATGGAAGTTTCCAA 276 43 617 Antisense
GTTTCCAACGTCCTACGGAAGCGAG 67 433 634 Antisense
GGAATTTCGTGAGACAGGCGTGCTG 160 533 662 Antisense
Sequence Source Affymetrix Proprietary Database