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[185591_at]

Description H41C03.1 /REP_DB=WormBase Gene ID /WP=CE19507 /TR=O76636 /GB=AAC26304.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 28      6grp_high1_10_10 > 82      4grp_highest_8_8 > 12      4grp_high_8_8 > 31      6grp_highest_nonorm > 45      6grp_total > 81      4grp_total > 32      6grp_highest_sub > 04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1455
1 2 3 4 range
A 385.4
(-3)
P 		1062.8
(-0.2)
P 		1413.9
(1.3)
P 		1836.6
(3)
P 		1451
B 508
(-3)
P 		1214.5
(1.8)
P 		1312.1
(2.4)
P 		1400
(3)
P 		892
C 381.3
(-3)
P 		1111
(0.6)
P 		1362.9
(1.9)
P 		1591
(3)
P 		1210
avr 424.9
(-3) 		1129.4
(0.6) 		1363
(1.8) 		1609.2
(3) 		1184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2821
1 2 3 4 5 6 range
A 1428.5
(-2.1)
P 		1068.6
(-3)
P 		1770.3
(-1.2)
P 		3428.9
(3)
P 		2446
(0.5)
P 		1066.5
(-3)
P 		2362
B 1180.3
(-2.3)
P 		919.7
(-3)
P 		2144.4
(0.2)
P 		3189.9
(3)
P 		2144.4
(0.2)
P 		1150.5
(-2.4)
P 		2270
C 866.7
(-3)
P 		984.4
(-2.7)
P 		1721.7
(-1.2)
P 		3687.8
(3)
P 		1926.2
(-0.7)
P 		1191.9
(-2.3)
P 		2821
avr 1158.5
(-2.6) 		990.9
(-3) 		1878.8
(-0.8) 		3435.5
(3) 		2172.2
(-0.1) 		1136.3
(-2.6) 		2445
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 349
1 2 3 4 range
A 140.3
(-3)
P 		230.7
(-0.6)
P 		369.6
(3)
P 		268.8
(0.4)
P 		229
B 162
(-3)
P 		300
(2.8)
P 		304
(3)
P 		298.3
(2.8)
P 		142
C 126.2
(-3)
P 		319.4
(0.3)
P 		475
(3)
P 		268.3
(-0.6)
P 		349
avr 142.8
(-3) 		283.4
(0.5) 		382.9
(3) 		278.5
(0.4) 		240

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 612
1 2 3 4 5 6 range
A 263.3
(-3)
P 		380
(-1.8)
P 		385.5
(-1.8)
P 		869.7
(3)
P 		738.1
(1.7)
P 		259.7
(-3)
P 		610
B 410.7
(-1.9)
P 		306.1
(-3)
P 		520.7
(-0.7)
P 		844.9
(2.7)
P 		871.3
(3)
P 		429
(-1.7)
P 		565
C 321.2
(-2.7)
P 		300.4
(-3)
P 		438.2
(-1.1)
P 		741.6
(3)
P 		623.3
(1.4)
P 		399
(-1.7)
P 		441
avr 331.7
(-3) 		328.8
(-3) 		448.1
(-1.5) 		818.7
(3) 		744.2
(2.1) 		362.6
(-2.6) 		490
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185591_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5367
Sequence Type Exemplar sequence
Representative Public ID H41C03.1 NCBI
Target Description H41C03.1 /REP_DB=WormBase Gene ID /WP=CE19507 /TR=O76636 /GB=AAC26304.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062767(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062767 NCBI Caenorhabditis elegans H41C03.1 (H41C03.1) mRNA, complete cds. 11/11 None
SNAP00000017246 ENSEMBL cdna:SNAP chromosome:CEL140:II:5854516:5857032:1 11/11 None
GENEFINDER00000017250 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5853809:5857032:1 11/11 None
H41C03.1 ENSEMBL cdna:known chromosome:CEL140:II:5854516:5857032:1 gene:H41C03.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5854512-5857029(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H41C03.1
Entrez Gene 173994 Entrez gene
SwissProt O76636 EMBL-EBI
WormBase CE19507 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC26304 Hypothetical protein H41C03.1 [Caenorhabditis elegans] ref|NP_495168.1| H41C03.1 [Caenorhabditis elegans] 0.0
blast CAE59210 Hypothetical protein CBG02523 [Caenorhabditis briggsae] 0.0
blast CAA96639 Hypothetical protein F28H7.8 [Caenorhabditis elegans] ref|NP_505746.2| F28H7.8 [Caenorhabditis elegans] sp|Q19895|YUQP_CAEEL Hypothetical protein F28H7.8 in chromosome V 4.0E-46
blast CAA96639 Hypothetical protein F28H7.8 [Caenorhabditis elegans] ref|NP_505746.2| F28H7.8 [Caenorhabditis elegans] sp|Q19895|YUQP_CAEEL Hypothetical protein F28H7.8 in chromosome V 2.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.2E-11
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.2E-11
Sequence
Target Sequence 
>C. ELEGANS:185591_AT
gaaagccattggaccacttctacctgaaagaactcgaaacaaagttcgtatttgttcggg
aaactcggattggaagacatcagttcaaaagcacgcacacatcgacaatattccaaaaca
ctggggtggaactctagtcgataaaaacggtgacggaatgtgccgtgacattttgaatat
tccatttgactcaatcccacaagagctctattggacaccaactcacgagactcctgccat
caaggacctcgtgtgcactaatattggacccggaaaatcggccgttttcacgtacacagt
tgacaaaagtgtcaccgaaccggtttatattgttatcaacagattttgcgatcgaacatt
tggaatgggtatttggcatggagatgatgaatgtttagagattgatgaaatgaatgaatt
ggctccagattttgattatccaggaatgcccactgttgattatctgcgtcttcgaatgcc
aggcgccggagtttataagatcaaatggggaaatgagcaagcttggatccgatcgttaac
cctttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAGCCATTGGACCACTTCTACCT 265 359 600 Antisense
GCACGCACACATCGACAATATTCCA 596 315 690 Antisense
TATTCCATTTGACTCAATCCCACAA 624 663 777 Antisense
TATTGGACACCAACTCACGAGACTC 514 665 808 Antisense
CTGCCATCAAGGACCTCGTGTGCAC 11 237 833 Antisense
CGTGTGCACTAATATTGGACCCGGA 53 209 849 Antisense
GGCCGTTTTCACGTACACAGTTGAC 388 543 879 Antisense
GGAATGCCCACTGTTGATTATCTGC 266 533 1042 Antisense
TGATTATCTGCGTCTTCGAATGCCA 104 565 1056 Antisense
GAATGCCAGGCGCCGGAGTTTATAA 357 331 1073 Antisense
TTGGATCCGATCGTTAACCCTTTAT 132 703 1122 Antisense
Sequence Source Affymetrix Proprietary Database