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[185588_at]

Description K02G10.1 /REP_DB=WormBase Gene ID /WP=CE04701 /TR=Q21161 /GB=AAK39249.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 12      6grp_high1_10_10 > 11      4grp_high_8_8 > 32      6grp_highest_nonorm > 61      6grp_total > 23      4grp_total > 47      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 180
1 2 3 4 range
A 424.9
(3)
P 		340.7
(-1.5)
P 		331.9
(-2)
P 		312.3
(-3)
P 		113
B 464.8
(3)
P 		310.7
(-3)
M 		355.7
(-1.2)
P 		318.1
(-2.7)
P 		154
C 452.6
(3)
P 		324.6
(-1.6)
P 		284.6
(-3)
P 		333.8
(-1.2)
P 		168
avr 447.4
(3) 		325.3
(-2.8) 		324.1
(-2.9) 		321.4
(-3) 		126

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 261
1 2 3 4 5 6 range
A 478.6
(3)
P 		380.8
(-0)
P 		319.9
(-1.9)
P 		321.9
(-1.8)
P 		325.5
(-1.7)
P 		284.5
(-3)
P 		194
B 420.5
(0.8)
P 		441.5
(1.5)
P 		484.8
(3)
P 		423.3
(0.9)
P 		307
(-3)
P 		312
(-2.8)
P 		178
C 492.8
(3)
P 		423.3
(1.4)
P 		397.1
(0.8)
P 		493.7
(3)
P 		232.8
(-3)
P 		321.8
(-1)
P 		261
avr 464
(3) 		415.2
(1.3) 		400.6
(0.8) 		413
(1.3) 		288.4
(-3) 		306.1
(-2.4) 		176
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 154.7
(3)
P 		74
(-1.4)
P 		86.8
(-0.7)
P 		45.7
(-3)
P 		109
B 148.2
(3)
P 		76.7
(-2.3)
M 		82.4
(-1.9)
P 		67.8
(-3)
P 		80
C 149.8
(3)
P 		93.3
(-0.6)
P 		99.2
(-0.2)
P 		56.3
(-3)
P 		94
avr 150.9
(3) 		81.3
(-1.4) 		89.5
(-0.9) 		56.6
(-3) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 88.2
(-1.3)
P 		135.4
(3)
P 		69.7
(-3)
P 		81.6
(-1.9)
P 		98.2
(-0.4)
P 		69.3
(-3)
P 		66
B 146.3
(2.9)
P 		147
(3)
P 		117.7
(-2)
P 		112.1
(-3)
P 		124.7
(-0.8)
P 		116.3
(-2.3)
P 		35
C 182.7
(3)
P 		129.1
(0)
P 		101.1
(-1.6)
P 		99.3
(-1.7)
P 		75.3
(-3)
P 		107.7
(-1.2)
P 		107
avr 139.1
(3) 		137.2
(2.7) 		96.2
(-3) 		97.7
(-2.8) 		99.4
(-2.6) 		97.8
(-2.8) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185588_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16410
Sequence Type Exemplar sequence
Representative Public ID K02G10.1 NCBI
Target Description K02G10.1 /REP_DB=WormBase Gene ID /WP=CE04701 /TR=Q21161 /GB=AAK39249.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076404(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076404 NCBI Caenorhabditis elegans K02G10.1 (K02G10.1) mRNA, complete cds. 9/11 None
SNAP00000043398 ENSEMBL cdna:SNAP chromosome:CEL140:X:4707157:4709085:1 9/11 None
GENEFINDER00000043401 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4707169:4709562:1 9/11 None
K02G10.1 ENSEMBL cdna:known chromosome:CEL140:X:4707157:4709085:1 gene:K02G10.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4707157-4709086(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K02G10.1
Entrez Gene 180745 Entrez gene
SwissProt Q21161 EMBL-EBI
WormBase CE35736 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
46872 metal ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK39249 Hypothetical protein K02G10.1 [Caenorhabditis elegans] ref|NP_508805.2| K02G10.1 [Caenorhabditis elegans] 1.0E-171
blast AAK39249 Hypothetical protein K02G10.1 [Caenorhabditis elegans] ref|NP_508805.2| K02G10.1 [Caenorhabditis elegans] 1.0E-169
blast CAE68636 Hypothetical protein CBG14526 [Caenorhabditis briggsae] 1.0E-155
blast CAE68636 Hypothetical protein CBG14526 [Caenorhabditis briggsae] 1.0E-153
blast T16541 hypothetical protein K02G10.1 - Caenorhabditis elegans 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 6.2E-22
Pfam IPR001594 EMBL-EBI Zn-finger, DHHC type 6.2E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508805.2 5 20-42,52-74,175-197,202-224,237-259
K02G10.1 5 20-42,52-74,175-197,202-224,237-259
SNAP00000043398 5 20-42,52-74,175-197,202-224,237-259
GENEFINDER00000043401 5 12-34,49-71,171-193,198-220,233-255
Sequence
Target Sequence 
>C. ELEGANS:185588_AT
actactcgtgcgtgcatgtcattgcagaaaatatgtacgataacccgacccacatctatt
ggttgacattggtcgccaaactcatcattttggaaatcgccgtcaatctggcctgctttg
tctattatgcacgaagtcatcattgtcctctgtgcaaaatgtgtgttctccgcaaagatc
atcactgtttcatcactggagcatgcgttgggctaggtaaccaggtttgtgaattgttgt
ttctctacttctgtaacttcttaaattttcagagatacttcatggtttttcttttttggt
gtgcaatcggcttgaccatcgctatgccacatttgtttttctacatgaatactgaagtcg
cttactggtacccattcggatttgtatactacatcggaccaatcgcagtggttcgctgga
tcttgggatatgtgcctttcagtcaagcatgcttctcgactcttttctcatttgcaggcg
catcccttataact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTACTCGTGCGTGCATGTCATTGC 84 95 113 Antisense
ACCCGACCCACATCTATTGGTTGAC 466 89 155 Antisense
CTGGCCTGCTTTGTCTATTATGCAC 411 241 220 Antisense
TGCACGAAGTCATCATTGTCCTCTG 353 577 240 Antisense
ATCATCACTGTTTCATCACTGGAGC 114 31 290 Antisense
GTTGTTTCTCTACTTCTGTAACTTC 598 437 348 Antisense
ACCATCGCTATGCCACATTTGTTTT 242 87 427 Antisense
TACTGAAGTCGCTTACTGGTACCCA 688 641 462 Antisense
AATCGCAGTGGTTCGCTGGATCTTG 162 169 513 Antisense
CAGTCAAGCATGCTTCTCGACTCTT 578 207 552 Antisense
ATTTGCAGGCGCATCCCTTATAACT 337 13 582 Antisense
Sequence Source Affymetrix Proprietary Database