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[185587_at]

Description H35B03.1 /REP_DB=WormBase Gene ID /WP=CE19504 /TR=Q9TYZ4 /GB=AAC68970.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 37      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 40      6grp_total > 27      4grp_total > 14      6grp_highest_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1236
1 2 3 4 range
A 969.6
(1)
P 		179.4
(-2.9)
P 		154.6
(-3)
P 		1390.5
(3)
P 		1236
B 741.7
(0.5)
P 		285.6
(-2.5)
P 		213.2
(-3)
P 		1111.8
(3)
P 		899
C 911.5
(3)
P 		253.2
(-3)
P 		312.9
(-2.5)
P 		797.2
(2)
P 		658
avr 874.3
(1.4) 		239.4
(-2.9) 		226.9
(-3) 		1099.8
(3) 		873

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 678
1 2 3 4 5 6 range
A 802.2
(3)
P 		601.8
(0.1)
P 		561.6
(-0.5)
P 		394.5
(-3)
P 		489.8
(-1.6)
P 		508.4
(-1.3)
P 		408
B 969.7
(3)
P 		658
(0.2)
P 		629
(-0)
P 		291.8
(-3)
P 		462.3
(-1.5)
P 		503
(-1.1)
P 		678
C 730.6
(3)
P 		496.2
(-0.9)
P 		509.5
(-0.7)
P 		393.9
(-2.6)
P 		369.3
(-3)
P 		730.7
(3)
P 		361
avr 834.2
(3) 		585.3
(-0.1) 		566.7
(-0.4) 		360.1
(-3) 		440.5
(-2) 		580.7
(-0.2) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 314
1 2 3 4 range
A 353
(3)
P 		38.9
(-3)
P 		40.4
(-3)
P 		203.5
(0.1)
P 		314
B 236.5
(3)
P 		70.5
(-2.3)
P 		49.4
(-3)
P 		236.9
(3)
P 		188
C 301.7
(3)
P 		72.8
(-3)
P 		109
(-2.1)
P 		134.4
(-1.4)
P 		229
avr 297.1
(3) 		60.7
(-3) 		66.3
(-2.9) 		191.6
(0.3) 		236

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 147.9
(-0.5)
P 		214
(3)
P 		122.3
(-1.8)
P 		100.1
(-3)
P 		147.8
(-0.5)
P 		123.8
(-1.8)
P 		114
B 337.4
(3)
P 		219
(0.3)
P 		152.7
(-1.3)
P 		77.3
(-3)
P 		187.8
(-0.5)
P 		187.6
(-0.5)
P 		260
C 270.8
(3)
P 		151.4
(-0.7)
P 		129.7
(-1.4)
P 		79.2
(-3)
P 		119.5
(-1.7)
P 		244.6
(2.2)
P 		192
avr 252
(3) 		194.8
(0.9) 		134.9
(-1.2) 		85.5
(-3) 		151.7
(-0.6) 		185.3
(0.6) 		167
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11008
Sequence Type Exemplar sequence
Representative Public ID H35B03.1 NCBI
Target Description H35B03.1 /REP_DB=WormBase Gene ID /WP=CE19504 /TR=Q9TYZ4 /GB=AAC68970.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068450(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068450 NCBI Caenorhabditis elegans H35B03.1 (H35B03.1) mRNA, complete cds. 9/11 None
GENEFINDER00000036700 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5725632:5729548:1 11/11 None
H35B03.1 ENSEMBL cdna:known chromosome:CEL140:IV:5725585:5729548:1 gene:H35B03.1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036697 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5725637-5729554(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H35B03.1
Entrez Gene 186800 Entrez gene
SwissProt Q9TYZ4 EMBL-EBI
WormBase CE31708 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68970 Hypothetical protein H35B03.1 [Caenorhabditis elegans] ref|NP_500851.2| H35B03.1 [Caenorhabditis elegans] 0.0
blast CAE72662 Hypothetical protein CBG19875 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185587_AT
gaagctcgtgtgttcgatgcaacagtattctgctcaactgctctgaaatacgataaagtt
ggattccgagtgggtgaagatgtacatcatgtggatattgctcatatatttcccgatgga
acatatccatcactttcacgtcttttatcaatgaatcctccatcaccaagattttctcgt
ccagaatctgttaatgattcagtttcaccttcattgatgtcagagccaccgactcctgga
ggtttagttgcaccacataatagaggaagacgagtttcttttgaaatttatgaggtgtca
aaaacccaaaaaaaactggaaccacaaaaaaaatattgcgattttcgaggcactaaactc
tacagtatccgcgtattttctttgcattttctgctatttttttctattttcaaaaatttt
ccaaaatttttgaaaagttcaacaaaatatgtatttttgcgaaaatatcggaaaatccag
caattgggaaccataaagctaatgtctgatggtcctacaactccag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGCTCGTGTGTTCGATGCAACAG 308 343 1018 Antisense
GTATTCTGCTCAACTGCTCTGAAAT 393 453 1042 Antisense
GGAACATATCCATCACTTTCACGTC 437 529 1135 Antisense
CATCACTTTCACGTCTTTTATCAAT 646 213 1145 Antisense
TTATCAATGAATCCTCCATCACCAA 581 679 1162 Antisense
CTCCATCACCAAGATTTTCTCGTCC 387 235 1175 Antisense
TCATTGATGTCAGAGCCACCGACTC 464 619 1228 Antisense
GACTCCTGGAGGTTTAGTTGCACCA 474 373 1248 Antisense
GGCACTAAACTCTACAGTATCCGCG 414 535 1366 Antisense
GTATCCGCGTATTTTCTTTGCATTT 417 455 1382 Antisense
ATGTCTGATGGTCCTACAACTCCAG 251 49 1519 Antisense
Sequence Source Affymetrix Proprietary Database