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[185585_at]

Description W09G12.9 /REP_DB=WormBase Gene ID /WP=CE18348 /TR=O45200 /GB=AAC04452.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_highest_nonorm > 92      6grp_total > 96      4grp_total > 04      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 415
1 2 3 4 range
A 286.5
(-0.8)
P 		150.3
(-3)
P 		246.9
(-1.4)
P 		518.2
(3)
P 		368
B 250.9
(-1.4)
P 		193.4
(-2.3)
P 		142.6
(-3)
P 		557.3
(3)
P 		415
C 293.6
(-1)
P 		234.2
(-2.1)
P 		189.6
(-3)
P 		497.6
(3)
P 		308
avr 277
(-1.5) 		192.6
(-3) 		193
(-3) 		524.4
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 427
1 2 3 4 5 6 range
A 132.8
(-3)
P 		232.3
(-0.6)
P 		208.4
(-1.2)
P 		385.2
(3)
P 		339.9
(1.9)
P 		332.3
(1.7)
P 		252
B 231.6
(-3)
P 		232.4
(-3)
P 		271.1
(-2.1)
P 		261.8
(-2.3)
P 		424.2
(1.6)
P 		481.8
(3)
P 		250
C 239.8
(-2.6)
P 		230.2
(-2.7)
P 		308.2
(-1.4)
P 		215.6
(-3)
P 		436.8
(0.9)
P 		560.1
(3)
P 		345
avr 201.4
(-3) 		231.6
(-2.3) 		262.6
(-1.6) 		287.5
(-1) 		400.3
(1.6) 		458.1
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 104.3
(3)
P 		32.6
(-3)
P 		64.5
(-0.3)
P 		75.8
(0.6)
P 		72
B 80
(0.3)
P 		47.8
(-2)
P 		33
(-3)
P 		118.8
(3)
P 		86
C 97.2
(3)
P 		67.3
(-2.8)
P 		66.1
(-3)
P 		83.9
(0.4)
P 		31
avr 93.8
(3) 		49.2
(-3) 		54.5
(-2.3) 		92.8
(2.9) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 24.5
(-3)
P 		82.6
(1.5)
P 		45.4
(-1.4)
P 		97.7
(2.6)
P 		102.6
(3)
P 		80.9
(1.3)
P 		78
B 80.6
(-2.2)
P 		77.4
(-2.4)
P 		65.8
(-3)
P 		69.3
(-2.8)
P 		172.3
(2.6)
P 		179.7
(3)
P 		114
C 88.9
(-1.1)
P 		70.2
(-1.9)
P 		78.4
(-1.5)
P 		43.4
(-3)
P 		141.4
(1.1)
P 		187.5
(3)
P 		144
avr 64.7
(-2.9) 		76.7
(-2.1) 		63.2
(-3) 		70.1
(-2.5) 		138.8
(2.3) 		149.4
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10760
Sequence Type Exemplar sequence
Representative Public ID W09G12.9 NCBI
Target Description W09G12.9 /REP_DB=WormBase Gene ID /WP=CE18348 /TR=O45200 /GB=AAC04452.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067654(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067654 NCBI Caenorhabditis elegans W09G12.9 (W09G12.9) mRNA, complete cds. 11/11 None
SNAP00000042740 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1216627:1218270:1 11/11 None
GENEFINDER00000042751 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1216627:1218270:1 11/11 None
W09G12.9 ENSEMBL cdna:known chromosome:CEL140:IV:1216627:1218270:1 gene:W09G12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1216632-1218276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G12.9
Entrez Gene 176940 Entrez gene
SwissProt O45200 EMBL-EBI
WormBase CE18348 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500055 W09G12.9 [Caenorhabditis elegans] gb|AAC04452.1| Hypothetical protein W09G12.9 [Caenorhabditis elegans] 1.0E-55
blast CAE68272 Hypothetical protein CBG13950 [Caenorhabditis briggsae] 4.0E-50
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500055.1 1 11-33
W09G12.9 1 11-33
SNAP00000042740 1 11-33
GENEFINDER00000042751 1 11-33
Sequence
Target Sequence 
>C. ELEGANS:185585_AT
caacgataaccaacgagctcgccgtcgtccttctgctcatcgctgccgcgcttctcgtcg
ttgttttctgtttgatttggatgttaaagtgcaggaagagatcatcccaaccaccgatcc
ttcccacggtatcacgaatcgaggagccatcgtgtacaaatgacgccttcgatgccatcg
aagacacctcggctcggaagattgaagaacgtcgccgagcacgtcagcaggcgcttcagt
actcgccgagagctgatttgtcgctgagaaaaatcgatccagaaattggaaaagcgttgg
ccgtggagcaattgatgcgtgattcgctcgtcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAACGATAACCAACGAGCTCGCCGT 636 187 26 Antisense
TTCTCGTCGTTGTTTTCTGTTTGAT 404 693 77 Antisense
CAGGAAGAGATCATCCCAACCACCG 102 207 117 Antisense
CTTCCCACGGTATCACGAATCGAGG 513 213 145 Antisense
TACAAATGACGCCTTCGATGCCATC 75 643 180 Antisense
TCGATGCCATCGAAGACACCTCGGC 107 603 194 Antisense
GACACCTCGGCTCGGAAGATTGAAG 643 367 208 Antisense
TTGAAGAACGTCGCCGAGCACGTCA 255 693 227 Antisense
ACTCGCCGAGAGCTGATTTGTCGCT 500 99 266 Antisense
GAAAAGCGTTGGCCGTGGAGCAATT 647 353 314 Antisense
ATTGATGCGTGATTCGCTCGTCTTC 665 3 336 Antisense
Sequence Source Affymetrix Proprietary Database