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[185584_at]

Description Y51H7C.7 /REP_DB=WormBase Gene ID /WP=CE22363 /TR=Q9N3J4 /GB=AAK39333.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 86      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_total > 87      4grp_total > 25      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 255
1 2 3 4 range
A 246.8
(-3)
P 		324.8
(-1.2)
P 		276
(-2.3)
P 		502.2
(3)
P 		255
B 274.8
(-3)
P 		366.1
(1.6)
P 		384.6
(2.6)
P 		393.3
(3)
P 		119
C 254.5
(-3)
P 		354.1
(2)
P 		322.1
(0.4)
P 		373.3
(3)
P 		119
avr 258.7
(-3) 		348.3
(0.3) 		327.6
(-0.5) 		422.9
(3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 313
1 2 3 4 5 6 range
A 199.5
(-2.9)
A 		197.6
(-3)
P 		263.8
(-1.2)
P 		228.8
(-2.2)
P 		264.5
(-1.2)
P 		424.2
(3)
P 		227
B 181
(-3)
P 		231.1
(-1.4)
P 		223.3
(-1.7)
P 		218.2
(-1.8)
P 		259.4
(-0.5)
P 		372.3
(3)
P 		191
C 166
(-3)
P 		197.9
(-2.4)
P 		176.8
(-2.8)
P 		223.8
(-1.9)
P 		346.8
(0.5)
P 		479.2
(3)
P 		313
avr 182.2
(-3) 		208.9
(-2.3) 		221.3
(-2) 		223.6
(-2) 		290.2
(-0.3) 		425.2
(3) 		243
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 89.8
(3)
P 		70.5
(-3)
P 		72.1
(-2.5)
P 		73.5
(-2.1)
P 		19
B 87.6
(0.5)
P 		90.4
(3)
P 		89.1
(1.8)
P 		83.8
(-3)
P 		7
C 84.3
(-0.4)
P 		101.8
(1.7)
P 		112.3
(3)
P 		62.9
(-3)
P 		49
avr 87.2
(1.7) 		87.6
(1.8) 		91.2
(3) 		73.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 124
1 2 3 4 5 6 range
A 36.8
(-3)
A 		70.3
(0)
P 		57.4
(-1.1)
P 		58
(-1.1)
P 		79.8
(0.9)
P 		103.3
(3)
P 		67
B 63
(-2.4)
P 		76.9
(-1.4)
P 		54.2
(-3)
P 		57.8
(-2.7)
P 		105.4
(0.6)
P 		138.8
(3)
P 		85
C 61.5
(-2.1)
P 		60.4
(-2.2)
P 		45
(-3)
P 		45
(-3)
P 		112.2
(0.5)
P 		160.4
(3)
P 		115
avr 53.8
(-2.9) 		69.2
(-1.8) 		52.2
(-3) 		53.6
(-2.9) 		99.1
(0.4) 		134.2
(3) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185584_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4834
Sequence Type Exemplar sequence
Representative Public ID Y51H7C.7 NCBI
Target Description Y51H7C.7 /REP_DB=WormBase Gene ID /WP=CE22363 /TR=Q9N3J4 /GB=AAK39333.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061564(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061564 NCBI Caenorhabditis elegans Y51H7C.7 (Y51H7C.7) mRNA, complete cds. 11/11 None
SNAP00000035524 ENSEMBL cdna:SNAP chromosome:CEL140:II:1402577:1403083:1 11/11 None
GENEFINDER00000035540 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1402577:1403083:1 11/11 None
Y51H7C.7 ENSEMBL cdna:known chromosome:CEL140:II:1402577:1403204:1 gene:Y51H7C.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1402575-1403082(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51H7C.7
Entrez Gene 173517 Entrez gene
SwissProt Q9N3J4 EMBL-EBI
WormBase CE22363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39333 Hypothetical protein Y51H7C.7 [Caenorhabditis elegans] ref|NP_493965.1| Y51H7C.7 [Caenorhabditis elegans] 5.0E-61
Sequence
Target Sequence 
>C. ELEGANS:185584_AT
gtcaatcccagctgatgtgatcgccaaattgcagaaattcgacgagctcatcacaaaatt
agaggatgcagttgaggaagtcgatgttggagttgaaaagcattttgagcgatccgctca
cgaaatggcccttgtcgacacgatgagcatgttcctaatggacagtttaatgtgggcagt
tcaagcgacaaaaggtggcggcgccgataaaaatgacgatttattgatcgatttggcccg
cacaaagcgaatgactgccgatatgaaggagataaatttgcggcaagatgcgccacggat
caacaagcaggccgccgcgaatttcgtaagaaacgctctctgggagcagccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAATCCCAGCTGATGTGATCGCC 238 463 27 Antisense
GAAATTCGACGAGCTCATCACAAAA 472 361 60 Antisense
GAAAAGCATTTTGAGCGATCCGCTC 400 353 121 Antisense
GCTCACGAAATGGCCCTTGTCGACA 142 301 142 Antisense
GTCGACACGATGAGCATGTTCCTAA 101 475 160 Antisense
GCGACAAAAGGTGGCGGCGCCGATA 569 287 211 Antisense
TTATTGATCGATTTGGCCCGCACAA 142 679 247 Antisense
CCCGCACAAAGCGAATGACTGCCGA 113 259 263 Antisense
TTTGCGGCAAGATGCGCCACGGATC 292 669 303 Antisense
TCAACAAGCAGGCCGCCGCGAATTT 706 629 326 Antisense
AAGAAACGCTCTCTGGGAGCAGCCG 215 153 354 Antisense
Sequence Source Affymetrix Proprietary Database