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[185582_at]

Description W09G12.6 /REP_DB=WormBase Gene ID /WP=CE18345 /TR=O45197 /GB=AAC04448.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 18      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 2.2
(-3)
A 		15.8
(0.2)
A 		10.5
(-1.1)
A 		28
(3)
A 		26
B 10.5
(-2.2)
A 		4.1
(-3)
A 		7.7
(-2.5)
A 		50.5
(3)
A 		46
C 8.1
(-1.2)
A 		16.3
(3)
A 		4.7
(-3)
A 		7.8
(-1.4)
A 		12
avr 6.9
(-3) 		12.1
(-1.6) 		7.6
(-2.8) 		28.8
(3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 11.6
(-2)
A 		7.6
(-2.6)
A 		41.3
(3)
A 		18.6
(-0.8)
A 		9
(-2.4)
A 		5.5
(-3)
A 		36
B 9.9
(0.5)
A 		10.7
(0.9)
A 		15.2
(3)
A 		2.6
(-3)
A 		4.9
(-1.9)
A 		5.8
(-1.5)
A 		13
C 3.4
(-3)
A 		4.2
(-2.7)
A 		18.9
(3)
A 		3.9
(-2.8)
A 		8.5
(-1)
A 		5
(-2.4)
A 		16
avr 8.3
(-2.1) 		7.5
(-2.4) 		25.1
(3) 		8.4
(-2.1) 		7.5
(-2.4) 		5.4
(-3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 0.8
(-3)
A 		3.4
(1.7)
A 		2.7
(0.5)
A 		4.1
(3)
A 		3
B 3.3
(-1.6)
A 		1
(-3)
A 		1.8
(-2.5)
A 		10.8
(3)
A 		10
C 2.7
(-0.5)
A 		4.7
(3)
A 		1.6
(-2.5)
A 		1.3
(-3)
A 		3
avr 2.3
(-2.5) 		3
(-1.2) 		2
(-3) 		5.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.1
(-2.4)
A 		2.7
(-1.9)
A 		9
(3)
A 		4.7
(-0.4)
A 		2.7
(-1.9)
A 		1.3
(-3)
A 		8
B 3.5
(2.6)
A 		3.6
(2.8)
A 		3.7
(3)
A 		0.7
(-3)
A 		2
(-0.4)
A 		2.2
(0)
A 		3
C 1.3
(-2.3)
A 		1.3
(-2.3)
A 		4.8
(3)
A 		0.8
(-3)
A 		2.8
(-0)
A 		1.7
(-1.7)
A 		4
avr 2.3
(-2.1) 		2.5
(-1.8) 		5.8
(3) 		2.1
(-2.4) 		2.5
(-1.8) 		1.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185582_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10382
Sequence Type Exemplar sequence
Representative Public ID W09G12.6 NCBI
Target Description W09G12.6 /REP_DB=WormBase Gene ID /WP=CE18345 /TR=O45197 /GB=AAC04448.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067657(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067657 NCBI Caenorhabditis elegans W09G12.6 (W09G12.6) mRNA, complete cds. 11/11 None
SNAP00000042743 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1229111:1232782:1 9/11 None
GENEFINDER00000042746 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1231897:1232812:1 11/11 None
W09G12.6 ENSEMBL cdna:known chromosome:CEL140:IV:1231897:1232812:1 gene:W09G12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1231902-1232818(+) 90.32 100.0
Public Domain and Genome References
Gene Title
Ensembl W09G12.6
Entrez Gene 176942 Entrez gene
SwissProt O45197 EMBL-EBI
WormBase CE18345 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_500057 W09G12.7 [Caenorhabditis elegans] gb|AAC04447.1| Hypothetical protein W09G12.7 [Caenorhabditis elegans] 5.0E-36
Sequence
Target Sequence 
>C. ELEGANS:185582_AT
gcttttccaagttcttatcatctccatgatttgcctggcacttgttgaagagaggcgaga
tcggagcaatcgtcgacgcaatcaatcagaagggggatccaggtcgagatccgaatcctg
gctcggatcttcaggatcttctagatctagatcttctggaagatctgccgcttctgctgg
atcgtctcaagctgcaagtcctgctggagcttctgccataggatcttctcaagctggaag
ttctgctgggagccctgctgctgctgccgctggtggatcaggtggagccgacgccggagc
aattctcaacggagtcggtggacttatgagaagtgtcggaggactggccggtgccgctgg
gggagctgccggtggagctgctggagccccagctggagctccagctggagcatcagccgg
agc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTTCCAAGTTCTTATCATCTCC 405 305 18 Antisense
TCATCTCCATGATTTGCCTGGCACT 280 621 35 Antisense
GCGAGATCGGAGCAATCGTCGACGC 571 289 72 Antisense
CCGAATCCTGGCTCGGATCTTCAGG 206 263 128 Antisense
TTCTGCTGGATCGTCTCAAGCTGCA 47 689 189 Antisense
GGAGCTTCTGCCATAGGATCTTCTC 231 521 223 Antisense
AAGCTGGAAGTTCTGCTGGGAGCCC 309 149 248 Antisense
TGCTGCCGCTGGTGGATCAGGTGGA 32 583 279 Antisense
GACGCCGGAGCAATTCTCAACGGAG 530 379 307 Antisense
GAAGTGTCGGAGGACTGGCCGGTGC 297 335 347 Antisense
CTCCAGCTGGAGCATCAGCCGGAGC 89 235 416 Antisense
Sequence Source Affymetrix Proprietary Database