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[185581_at]

Description Y48A6B.13 /REP_DB=WormBase Gene ID /WP=CE19195 /TR=Q9XXC7 /GB=CAA19534.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 65      4grp_total > 21      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 106
1 2 3 4 range
A 171.8
(1.6)
P 		106.3
(-3)
A 		125.6
(-1.6)
A 		191.1
(3)
M 		85
B 150.7
(0.6)
P 		192.6
(3)
A 		86.9
(-3)
A 		160
(1.1)
P 		106
C 143.5
(0)
P 		125.3
(-1.5)
P 		108.1
(-3)
M 		178.5
(3)
P 		70
avr 155.3
(1.2) 		141.4
(-0) 		106.9
(-3) 		176.5
(3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 73.1
(-1.8)
A 		114.8
(2.3)
P 		61.4
(-3)
A 		80.8
(-1.1)
A 		93.4
(0.2)
A 		122.2
(3)
P 		61
B 112.8
(1.6)
P 		101.2
(0.9)
A 		135.5
(3)
P 		85.5
(-0)
P 		36.2
(-3)
A 		127.4
(2.5)
P 		99
C 86.5
(-0)
P 		46.4
(-3)
A 		120.8
(2.5)
A 		120.4
(2.5)
A 		77.4
(-0.7)
A 		127.2
(3)
P 		81
avr 90.8
(-0.7) 		87.5
(-1) 		105.9
(0.9) 		95.6
(-0.2) 		69
(-3) 		125.6
(3) 		57
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 62.6
(3)
P 		23.1
(-3)
A 		32.8
(-1.5)
A 		28
(-2.3)
M 		40
B 48.1
(3)
P 		47.6
(2.9)
A 		20.1
(-3)
A 		34.1
(0)
P 		28
C 47.5
(3)
P 		36
(-1)
P 		37.7
(-0.4)
M 		30.1
(-3)
P 		17
avr 52.7
(3) 		35.6
(-1.6) 		30.2
(-3) 		30.7
(-2.9) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.5
(-3)
A 		40.8
(3)
P 		13.4
(-3)
A 		20.5
(-1.4)
A 		28.2
(0.2)
A 		29.7
(0.6)
P 		27
B 39.2
(1.5)
P 		33.7
(0.5)
A 		32.9
(0.3)
P 		22.6
(-1.6)
P 		14.7
(-3)
A 		47.5
(3)
P 		33
C 32.1
(0.8)
P 		14.2
(-3)
A 		30.7
(0.5)
A 		24.2
(-0.9)
A 		25
(-0.7)
A 		42.6
(3)
P 		28
avr 28.3
(-1) 		29.6
(-0.5) 		25.7
(-1.9) 		22.4
(-3) 		22.6
(-2.9) 		39.9
(3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6017
Sequence Type Exemplar sequence
Representative Public ID Y48A6B.13 NCBI
Target Description Y48A6B.13 /REP_DB=WormBase Gene ID /WP=CE19195 /TR=Q9XXC7 /GB=CAA19534.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067021(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067021 NCBI Caenorhabditis elegans Y48A6B.13 (Y48A6B.13) mRNA, complete cds. 11/11 None
GENEFINDER00000033017 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11048759:11061718:1 11/11 None
Y48A6B.13.2 ENSEMBL cdna:known chromosome:CEL140:III:11052784:11062878:1 gene:Y48A6B.13 11/11 None
Y48A6B.13.1 ENSEMBL cdna:known chromosome:CEL140:III:11055877:11062878:1 gene:Y48A6B.13 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11056117-11061714(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48A6B.13
Entrez Gene 3564779 Entrez gene
SwissProt Q9XXC7 EMBL-EBI
WormBase CE19195 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA19534 Hypothetical protein Y48A6B.13 [Caenorhabditis elegans] ref|NP_499422.1| Y48A6B.13 [Caenorhabditis elegans] 1.0E-166
blast CAE67616 Hypothetical protein CBG13164 [Caenorhabditis briggsae] 2.0E-89
blast CAE67616 Hypothetical protein CBG13164 [Caenorhabditis briggsae] 1.0E-73
Sequence
Target Sequence 
>C. ELEGANS:185581_AT
ttagtgccggagccggagcacaccacaagaagcatgaatcgatggaagagcccgtctttt
tggatgctcctgagacaatttctgttaatacggcgccaggattctcgtacgcggacgctg
cgaagaagacatcaggagaaaattcaccagaaatgtctccaattccaccaccaccaccag
catccacagcttctgctgagccaattgttgagaagaagccgttgagagaaggttccagtg
gaggagctgtacagcttccaccgtcgactcttgccgcttcggatatttcgtttggatatg
aggagacgccagaagacaaacgaaagcgtcttcaaaaggaatcaaaaagtgtcacatctc
caccaccaccaacacaaaaagctcctccgccgccgccaactcgaatgaacggtgacgatt
tgttgagatcattcaccacacaagatggaaatggtggaaatcgtcttgccggacttcagg
aaatgcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTAGTGCCGGAGCCGGAGCACACCA 616 649 593 Antisense
AGAGCCCGTCTTTTTGGATGCTCCT 384 69 639 Antisense
GATGCTCCTGAGACAATTTCTGTTA 76 415 655 Antisense
GTTAATACGGCGCCAGGATTCTCGT 563 445 676 Antisense
TTCTCGTACGCGGACGCTGCGAAGA 509 689 694 Antisense
CACCAGAAATGTCTCCAATTCCACC 186 201 737 Antisense
CATCCACAGCTTCTGCTGAGCCAAT 514 211 773 Antisense
GTGGAGGAGCTGTACAGCTTCCACC 111 489 830 Antisense
TTGCCGCTTCGGATATTTCGTTTGG 645 611 863 Antisense
AATGGTGGAAATCGTCTTGCCGGAC 482 163 1042 Antisense
GTCTTGCCGGACTTCAGGAAATGCC 520 467 1055 Antisense
Sequence Source Affymetrix Proprietary Database