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[185580_s_at]

Description F59C12.3 /REP_DB=WormBase Gene ID /WP=CE04684 /TR=Q21036 /GB=AAK29710.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 67.8
(3)
P 		58.4
(1.7)
A 		37.1
(-1.1)
A 		23.2
(-3)
A 		45
B 70.9
(2.2)
P 		80.2
(3)
P 		6.4
(-3)
A 		68.7
(2.1)
P 		74
C 57.4
(2.5)
P 		38.8
(-0.1)
A 		17.7
(-3)
A 		60.7
(3)
A 		43
avr 65.4
(3) 		59.1
(2.2) 		20.4
(-3) 		50.9
(1.1) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 108.5
(3)
P 		50.5
(-1.8)
P 		40.4
(-2.6)
A 		37.8
(-2.8)
A 		35.8
(-3)
A 		44.4
(-2.3)
A 		73
B 56.5
(-0.5)
P 		31.9
(-2.5)
A 		99.8
(3)
P 		33.1
(-2.4)
A 		47.5
(-1.2)
A 		25.3
(-3)
P 		75
C 42.3
(-1.6)
A 		32.7
(-3)
A 		75
(3)
A 		60.3
(0.9)
M 		58.6
(0.7)
A 		51.8
(-0.3)
P 		42
avr 69.1
(2.5) 		38.4
(-3) 		71.7
(3) 		43.7
(-2) 		47.3
(-1.4) 		40.5
(-2.6) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 24.7
(3)
P 		12.7
(-0.4)
A 		9.7
(-1.2)
A 		3.4
(-3)
A 		21
B 22.6
(3)
P 		19.8
(2.2)
P 		1.5
(-3)
A 		14.6
(0.7)
P 		21
C 19
(3)
P 		11.2
(-0.7)
A 		6.2
(-3)
A 		10.2
(-1.1)
A 		13
avr 22.1
(3) 		14.6
(0.2) 		5.8
(-3) 		9.4
(-1.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 20
(3)
P 		18
(1.9)
P 		8.8
(-3)
A 		9.6
(-2.6)
A 		10.8
(-1.9)
A 		10.8
(-1.9)
A 		11
B 19.7
(1.2)
P 		10.6
(-2.3)
A 		24.2
(3)
P 		8.8
(-3)
A 		19.3
(1.1)
A 		9.4
(-2.8)
P 		15
C 15.7
(0.8)
A 		10
(-3)
A 		19.1
(3)
A 		12.1
(-1.6)
M 		19
(2.9)
A 		17.3
(1.8)
P 		9
avr 18.5
(3) 		12.9
(-1) 		17.4
(2.2) 		10.2
(-3) 		16.4
(1.5) 		12.5
(-1.3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185580_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17566
Sequence Type Exemplar sequence
Representative Public ID F59C12.3 NCBI
Target Description F59C12.3 /REP_DB=WormBase Gene ID /WP=CE04684 /TR=Q21036 /GB=AAK29710.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078285
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F59C12.3.1 ENSEMBL cdna:known chromosome:CEL140:X:16603299:16609437:-1 gene:F59C12.3 None
F59C12.3.2 ENSEMBL cdna:known chromosome:CEL140:X:16603299:16609676:-1 gene:F59C12.3 None
NM_078285 NCBI Caenorhabditis elegans F59C12.3 (F59C12.3) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16603615-16609704(-) 98.45 100.0
Public Domain and Genome References
Gene Title
Ensembl F59C12.3
Entrez Gene 181718 Entrez gene
SwissProt Q21036 EMBL-EBI
WormBase CE35728 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.27897.1.S1_AT similar to angiomotin cfa
CANINE_2:CFAAFFX.27900.1.S1_S_AT similar to angiomotin cfa
CHICKEN:GGA.11731.1.S1_AT angiomotin gga
CHICKEN:GGAAFFX.22422.1.S1_S_AT angiomotin gga
HG-U95AV2:38286_AT angiomotin hs
HG-U133_PLUS_2:209521_S_AT angiomotin hs
HG-U133A:209521_S_AT angiomotin hs
HG-U133A_2:209521_S_AT angiomotin hs
HU35KSUBB:RC_N29744_AT angiomotin hs
U133_X3P:G9887325_3P_A_AT angiomotin hs
Protein Similarities
Method ID Description E-Value
blast AAK29710 Hypothetical protein F59C12.3 [Caenorhabditis elegans] ref|NP_510686.3| F59C12.3 [Caenorhabditis elegans] 0.0
blast T29879 hypothetical protein F59C12.3 - Caenorhabditis elegans 0.0
blast CAE69983 Hypothetical protein CBG16381 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:185580_S_AT
gctttttttagaactcacggtgacaaaactgagcaacggaagtcaactcttgcaacaata
actgacaactttgaaacccaggtggacaaattgaaagaggagagttatgaaaaggatctg
atcatcaacgaactgaggtcggagcgggacaaatatgcagcaatggtagataaaaacagc
ggagacgaggcactgagtagaatggaggaaattagacagaaaatacaggaaaggaagaaa
aaaggtcgaatgggcgtgactggagggctatcagaacatgcaagaacttcatcgggctcg
ttgatgcaaaattctcttcatcggagttttctgaacgaaagcaaaactacagtgaatctt
gaacttttctctaattttgaatactttctagaaacacacataggtcaagctgaaaatact
agctccagaatctattacgattcgataaacatcttcaaaagtaacaaactatacaaaaaa
agttgcagatcatcatctggatcatcattcgaccctgtaccgactgctccaattccttac
aatatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTTTTTTAGAACTCACGGTGACA 166 303 1216 Antisense
CAACGGAAGTCAACTCTTGCAACAA 661 185 1249 Antisense
AACGAACTGAGGTCGGAGCGGGACA 128 143 1342 Antisense
AGCGGAGACGAGGCACTGAGTAGAA 677 79 1393 Antisense
GAATGGGCGTGACTGGAGGGCTATC 147 333 1463 Antisense
ATGCAAGAACTTCATCGGGCTCGTT 60 43 1493 Antisense
GGCTCGTTGATGCAAAATTCTCTTC 642 539 1510 Antisense
AATTCTCTTCATCGGAGTTTTCTGA 237 177 1525 Antisense
CAGTGAATCTTGAACTTTTCTCTAA 4 209 1565 Antisense
TACTAGCTCCAGAATCTATTACGAT 703 645 1632 Antisense
ACTGCTCCAATTCCTTACAATATGT 96 99 1738 Antisense
Sequence Source Affymetrix Proprietary Database