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[185579_at]

Description R09F10.8 /REP_DB=WormBase Gene ID /WP=CE07442 /TR=Q23031 /GB=AAC69097.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.8
(-2.9)
A 		6.6
(-0.7)
A 		2.6
(-3)
A 		13
(3)
A 		10
B 3.9
(-0.9)
A 		2.6
(-3)
A 		6.3
(3)
A 		4.1
(-0.6)
A 		4
C 5.2
(-2)
A 		3.4
(-3)
A 		4.3
(-2.5)
A 		14.6
(3)
A 		11
avr 4
(-3) 		4.2
(-2.8) 		4.4
(-2.6) 		10.6
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 2.9
(-3)
A 		8.5
(-2.7)
A 		7
(-2.8)
A 		3.1
(-3)
A 		37.7
(-1.1)
A 		112.5
(3)
A 		110
B 4
(-2.9)
A 		3
(-3)
A 		3.1
(-3)
A 		2.5
(-3)
A 		29.7
(-1.1)
A 		87
(3)
A 		85
C 2.1
(-3)
A 		2.5
(-3)
A 		9.1
(-2.5)
A 		3.3
(-2.9)
A 		35.1
(-0.8)
A 		90.6
(3)
A 		89
avr 3
(-3) 		4.7
(-2.9) 		6.4
(-2.8) 		3
(-3) 		34.2
(-1) 		96.7
(3) 		94
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1
(-1.5)
A 		1.4
(0.5)
A 		0.7
(-3)
A 		1.9
(3)
A 		1
B 1.3
(1.7)
A 		0.6
(-3)
A 		1.5
(3)
A 		0.9
(-1)
A 		1
C 1.7
(-0.2)
A 		1
(-3)
A 		1.5
(-1)
A 		2.5
(3)
A 		2
avr 1.3
(-0.8) 		1
(-3) 		1.2
(-1.5) 		1.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.5
(-3)
A 		3
(-2.4)
A 		1.5
(-2.8)
A 		0.8
(-2.9)
A 		11.4
(-0.6)
A 		27.4
(3)
A 		27
B 1.4
(-2.9)
A 		1
(-2.9)
A 		0.8
(-3)
A 		0.7
(-3)
A 		12
(-0.9)
A 		32.4
(3)
A 		32
C 0.8
(-3)
A 		0.8
(-3)
A 		2.3
(-2.7)
A 		0.7
(-3)
A 		11.4
(-0.8)
A 		30.3
(3)
A 		30
avr 0.9
(-3) 		1.6
(-2.8) 		1.5
(-2.8) 		0.7
(-3) 		11.6
(-0.8) 		30
(3) 		29
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185579_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16377
Sequence Type Exemplar sequence
Representative Public ID R09F10.8 NCBI
Target Description R09F10.8 /REP_DB=WormBase Gene ID /WP=CE07442 /TR=Q23031 /GB=AAC69097.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077008(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077008 NCBI Caenorhabditis elegans R09F10.8 (R09F10.8) mRNA, complete cds. 11/11 None
R09F10.8.1 ENSEMBL cdna:known chromosome:CEL140:X:8325071:8326390:-1 gene:R09F10.8 11/11 None
R09F10.8.2 ENSEMBL cdna:known chromosome:CEL140:X:8325114:8326389:-1 gene:R09F10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8325164-8326385(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R09F10.8
Entrez Gene 181088 Entrez gene
SwissProt Q23031 EMBL-EBI
WormBase CE28756 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_509409 R09F10.8 [Caenorhabditis elegans] gb|AAC69097.2| Hypothetical protein R09F10.8 [Caenorhabditis elegans] 1.0E-173
blast CAE68102 Hypothetical protein CBG13742 [Caenorhabditis briggsae] 1.0E-47
blast CAE68103 Hypothetical protein CBG13743 [Caenorhabditis briggsae] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:185579_AT
gagagcaacattccaacgacgtacaagctcgaacccatcagcacggacagtgtcttcttc
caccccattgcagcaaccattggccgacaagacgaagccttatctgaagatgaggaaaag
ttggctacggatctgcttgggaaggtccagagactttctgatcatgattctgaatctact
gatatggaggcaattctcaatgaaaaaaacagattcacaattgaggaatttgaggaaaaa
ctcttttcggcaatgtctaatcgtcgccgcccaatcaagaagtttgagcgggaggaagaa
gatcaagacgatgatgaatattctgaagttgaagagaaggaatcgcatcccaaaaagcgt
cgtgaacataagaaagggcgccacacccgagttctcagcgacgagcaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAGCAACATTCCAACGACGTACA 282 395 460 Antisense
CAACGACGTACAAGCTCGAACCCAT 658 187 473 Antisense
GAACCCATCAGCACGGACAGTGTCT 253 347 490 Antisense
CCATTGCAGCAACCATTGGCCGACA 18 271 524 Antisense
GCCGACAAGACGAAGCCTTATCTGA 236 285 542 Antisense
AGTTGGCTACGGATCTGCTTGGGAA 575 63 578 Antisense
GGGAAGGTCCAGAGACTTTCTGATC 182 489 598 Antisense
AAAACTCTTTTCGGCAATGTCTAAT 297 129 696 Antisense
GTCGCCGCCCAATCAAGAAGTTTGA 315 475 722 Antisense
ATAAGAAAGGGCGCCACACCCGAGT 334 1 827 Antisense
CCCGAGTTCTCAGCGACGAGCAAGA 167 261 845 Antisense
Sequence Source Affymetrix Proprietary Database