[Home] | [Total List]

[185576_at]

Description K02E10.3 /REP_DB=WormBase Gene ID /WP=CE04695 /TR=Q21135 /GB=AAC47069.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 34      6grp_high1_10_10 > 33      6grp_highest_nonorm > 71      6grp_total > 21      4grp_total > 49      6grp_highest_sub > 02_03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 845
1 2 3 4 range
A 35.9
(-3)
A 		858.5
(3)
P 		738.9
(2.1)
P 		141.9
(-2.2)
P 		823
B 76.6
(-2.7)
A 		688.1
(3)
P 		607.4
(2.2)
P 		45.4
(-3)
A 		643
C 14
(-3)
A 		800.7
(3)
P 		727.5
(2.4)
P 		198.3
(-1.6)
P 		787
avr 42.2
(-3) 		782.4
(3) 		691.3
(2.3) 		128.5
(-2.3) 		740

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 265.4
(-1.1)
P 		481.7
(3)
P 		431.8
(2.1)
P 		308.8
(-0.2)
P 		287.3
(-0.6)
P 		161.5
(-3)
P 		320
B 321.9
(-0)
P 		483
(3)
P 		359.7
(0.7)
P 		354.5
(0.6)
P 		247.2
(-1.4)
P 		163.6
(-3)
P 		319
C 296.8
(1)
P 		361.5
(3)
P 		331.8
(2.1)
P 		318.9
(1.7)
P 		311.7
(1.5)
P 		168.6
(-3)
P 		193
avr 294.7
(-0.2) 		442.1
(3) 		374.4
(1.5) 		327.4
(0.5) 		282.1
(-0.5) 		164.6
(-3) 		278
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 249
1 2 3 4 range
A 13.1
(-3)
A 		186.4
(2.8)
P 		193.2
(3)
P 		20.8
(-2.7)
P 		180
B 24.4
(-2.4)
A 		170
(3)
P 		140.7
(1.9)
P 		9.7
(-3)
A 		160
C 4.6
(-3)
A 		230.2
(2.4)
P 		253.6
(3)
P 		33.4
(-2.3)
P 		249
avr 14
(-3) 		195.5
(3) 		195.8
(3) 		21.3
(-2.8) 		182

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 48.9
(-2.6)
P 		171.3
(3)
P 		94
(-0.5)
P 		78.3
(-1.2)
P 		86.7
(-0.8)
P 		39.3
(-3)
P 		132
B 112
(0.1)
P 		160.8
(3)
P 		87.4
(-1.4)
P 		93.9
(-1)
P 		100.4
(-0.6)
P 		61
(-3)
P 		100
C 110
(3)
P 		110.3
(3)
P 		84.4
(0.1)
P 		64.1
(-2.1)
P 		100.9
(2)
P 		56.4
(-3)
P 		54
avr 90.3
(-0.6) 		147.5
(3) 		88.6
(-0.7) 		78.8
(-1.3) 		96
(-0.2) 		52.2
(-3) 		95
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185576_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18547
Sequence Type Exemplar sequence
Representative Public ID K02E10.3 NCBI
Target Description K02E10.3 /REP_DB=WormBase Gene ID /WP=CE04695 /TR=Q21135 /GB=AAC47069.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029580, NM_001029579
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K02E10.4b ENSEMBL cdna:known chromosome:CEL140:X:2483256:2488260:1 gene:K02E10.4 None
K02E10.4a ENSEMBL cdna:known chromosome:CEL140:X:2483256:2488209:1 gene:K02E10.4 None
GENEFINDER00000017108 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2483256:2488209:1 None
NM_001029579 NCBI Caenorhabditis elegans K02E10.4a (K02E10.4) mRNA, complete cds. None
NM_001029580 NCBI Caenorhabditis elegans K02E10.4b (K02E10.4) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2487712-2488209(+) 92.28 100.0
Public Domain and Genome References
Ensembl K02E10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05564 Hypothetical protein K02E10.4b [Caenorhabditis elegans] ref|NP_001024751.1| K02E10.4b [Caenorhabditis elegans] 0.0
blast AAC47069 Hypothetical protein K02E10.4a [Caenorhabditis elegans] ref|NP_001024750.1| K02E10.4a [Caenorhabditis elegans] 0.0
blast T16520 hypothetical protein K02E10.4 - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024751.1 2 29-46,66-88
NP_001024750.1 2 29-46,66-88
K02E10.4b 2 29-46,66-88
K02E10.4a 2 29-46,66-88
GENEFINDER00000017108 2 29-46,66-88
Sequence
Target Sequence 
>C. ELEGANS:185576_AT
aactattagaggccgttgctcgtcgaaaccgactgaatggagttcaaagttttactggaa
gcacggaattcaagccatcaactttaaacctcgagaaaaatcagcaaaacgatccggtac
aatcgtcatgcattggcacaaaaactgctctcgtatcaaattagaaatgggtggccgtat
gacgagcgcttctacagaccaggttttgaaaatttttcagatgaatatagacttggaaat
ttcagatgtggatgtttacaccgaggagcaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTATTAGAGGCCGTTGCTCGTCG 434 137 27 Antisense
CCGTTGCTCGTCGAAACCGACTGAA 223 263 39 Antisense
GAAGCACGGAATTCAAGCCATCAAC 214 341 84 Antisense
AGCCATCAACTTTAAACCTCGAGAA 550 81 99 Antisense
ATCAGCAAAACGATCCGGTACAATC 511 25 126 Antisense
GGTACAATCGTCATGCATTGGCACA 227 501 142 Antisense
GCATTGGCACAAAAACTGCTCTCGT 361 307 156 Antisense
AAAAACTGCTCTCGTATCAAATTAG 276 129 166 Antisense
AATGGGTGGCCGTATGACGAGCGCT 70 163 192 Antisense
AGCGCTTCTACAGACCAGGTTTTGA 604 61 211 Antisense
GTGGATGTTTACACCGAGGAGCAAA 504 489 274 Antisense
Sequence Source Affymetrix Proprietary Database