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[185575_s_at]

Description Y46H3B.2 /REP_DB=WormBase Gene ID /WP=CE24311 /TR=Q9N4W5 /GB=AAF60622.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 41      6grp_total > 31      4grp_total > 61      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 163
1 2 3 4 range
A 153.4
(2)
P 		181.3
(3)
P 		159.4
(2.2)
P 		18.3
(-3)
A 		163
B 157.9
(3)
P 		107.4
(0.4)
P 		126.7
(1.4)
P 		40.9
(-3)
A 		117
C 177.9
(3)
P 		126.9
(0.1)
P 		107.3
(-0.9)
P 		70.6
(-3)
A 		107
avr 163.1
(3) 		138.5
(1.8) 		131.1
(1.4) 		43.3
(-3) 		120

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 134.2
(1.4)
P 		168.4
(3)
P 		155.2
(2.4)
P 		128.3
(1.1)
P 		113.7
(0.4)
P 		43.8
(-3)
A 		125
B 108
(-0.1)
P 		137.3
(1.2)
P 		176.1
(3)
P 		97.1
(-0.7)
P 		63
(-2.2)
P 		46.3
(-3)
M 		130
C 74.5
(-3)
P 		125.1
(0.9)
P 		153
(3)
P 		149.8
(2.8)
P 		80.7
(-2.5)
P 		74.9
(-3)
P 		79
avr 105.6
(-0.1) 		143.6
(2) 		161.4
(3) 		125.1
(1) 		85.8
(-1.3) 		55
(-3) 		106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 55.8
(3)
P 		39.4
(1.1)
P 		41.7
(1.4)
P 		2.7
(-3)
A 		53
B 50.3
(3)
P 		26.5
(-0.4)
P 		29.4
(-0)
P 		8.7
(-3)
A 		42
C 58.9
(3)
P 		36.5
(0.1)
P 		37.4
(0.3)
P 		11.9
(-3)
A 		47
avr 55
(3) 		34.1
(0.3) 		36.2
(0.6) 		7.8
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 24.7
(-1.3)
P 		59.9
(3)
P 		33.8
(-0.2)
P 		32.5
(-0.3)
P 		34.3
(-0.1)
P 		10.7
(-3)
A 		49
B 37.6
(1.3)
P 		45.7
(3)
P 		42.8
(2.4)
P 		25.7
(-1.2)
P 		25.6
(-1.2)
P 		17.3
(-3)
M 		28
C 27.6
(-1.9)
P 		38.2
(2.7)
P 		38.9
(3)
P 		30.1
(-0.8)
P 		26.1
(-2.6)
P 		25.1
(-3)
P 		14
avr 30
(-0.6) 		47.9
(3) 		38.5
(1.1) 		29.4
(-0.7) 		28.7
(-0.8) 		17.7
(-3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185575_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15905
Sequence Type Exemplar sequence
Representative Public ID Y46H3B.2 NCBI
Target Description Y46H3B.2 /REP_DB=WormBase Gene ID /WP=CE24311 /TR=Q9N4W5 /GB=AAF60622.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071098(11), NM_071099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071098 NCBI Caenorhabditis elegans Y46H3B.2 (Y46H3B.2) mRNA, complete cds. 11/11 A 
NM_071099 NCBI Caenorhabditis elegans Y46H3B.1 (Y46H3B.1) mRNA, complete cds. 11/11 A 
SNAP00000024240 ENSEMBL cdna:SNAP chromosome:CEL140:V:1757474:1760074:1 11/11 None
SNAP00000024241 ENSEMBL cdna:SNAP chromosome:CEL140:V:1761911:1765100:1 11/11 None
Y46H3B.2 ENSEMBL cdna:known chromosome:CEL140:V:1757047:1760074:1 gene:Y46H3B.2 11/11 A 
Y46H3B.1 ENSEMBL cdna:known chromosome:CEL140:V:1760768:1765100:1 gene:Y46H3B.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000024242 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1757046-1760074(+) 100.0 100.0
Public Domain and Genome References
Gene Title

Ensembl Y46H3B.2
Y46H3B.1
Entrez Gene 178656 Entrez gene
178657 Entrez gene
SwissProt Q9N4W4 EMBL-EBI
Q9N4W5 EMBL-EBI
WormBase CE30011 Wormbase
CE35805 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60622 Hypothetical protein Y46H3B.2 [Caenorhabditis elegans] ref|NP_503499.2| Y46H3B.2 [Caenorhabditis elegans] 0.0
blast AAF60621 Hypothetical protein Y46H3B.1 [Caenorhabditis elegans] ref|NP_503500.2| Y46H3B.1 [Caenorhabditis elegans] 0.0
blast CAE56908 Hypothetical protein CBG24749 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-4
Pfam IPR001304 EMBL-EBI C-type lectin 2.3E-8
Pfam IPR001304 EMBL-EBI C-type lectin 9.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-11
Pfam IPR001304 EMBL-EBI C-type lectin 2.3E-8
Pfam IPR001304 EMBL-EBI C-type lectin 1.9E-11
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503500.2 1 2-19
Y46H3B.1 1 2-19
Sequence
Target Sequence 
>C. ELEGANS:185575_S_AT
cgacgcaactacctacacggattgtgcgtacatgaacgtgaccgacaagctttggtactc
ggacggggaatgtaccacggaacgacaagtgctctgccaatatgtgctcccaacaccacc
gacaccgaatccaacgatttcatggcaagatccatgcttctacgaaacgacaacttttaa
atatttcgagtcattacacaatgccaaatgctatagggtgtcctcagaaaaaaagcagtt
tgttgatgctgaaaatctgtgcttatccaaacatccattattcctgcatacccctaaact
gacatcaattgagacaaaaatcgaagaggatcaggttagaactttaatacacacacaacc
tcttgtcaatgagggaatgttttggtttgggttgaaacgggacccctcaaattcttcaaa
ctggtatttcatcaacggagacacctatgactccagttatcaaaactggcgatccggata
tccacgagatgctgatggttgtgattgtgtggcgctggtgataaatgataattcatgggt
gaatactgactgcaataagcagctgtattcgatatgtgctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACGCAACTACCTACACGGATTGT 543 251 969 Antisense
ACGCAACTACCTACACGGATTGTGC 193 91 971 Antisense
CGACAAGCTTTGGTACTCGGACGGG 212 253 1011 Antisense
AGTTATCAAAACTGGCGATCCGGAT 138 63 1423 Antisense
AAACTGGCGATCCGGATATCCACGA 545 127 1431 Antisense
GGCGATCCGGATATCCACGAGATGC 710 521 1436 Antisense
ATCCGGATATCCACGAGATGCTGAT 336 39 1440 Antisense
GAGATGCTGATGGTTGTGATTGTGT 129 397 1454 Antisense
CATGGGTGAATACTGACTGCAATAA 469 209 1502 Antisense
ACTGCAATAAGCAGCTGTATTCGAT 352 91 1517 Antisense
GCAGCTGTATTCGATATGTGCTTTT 157 315 1527 Antisense
Sequence Source Affymetrix Proprietary Database