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[185574_at]

Description Y46H3B.2 /REP_DB=WormBase Gene ID /WP=CE24311 /TR=Q9N4W5 /GB=AAF60622.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 20      4grp_total > 51      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 104.2
(1.2)
P 		140.4
(3)
P 		112.4
(1.6)
P 		22.6
(-3)
A 		118
B 71.4
(1)
P 		96.6
(2.5)
P 		103.7
(3)
P 		9.1
(-3)
A 		95
C 98.3
(1)
P 		127.4
(3)
P 		99.6
(1.1)
P 		39.6
(-3)
M 		88
avr 91.3
(1.1) 		121.5
(3) 		105.2
(2) 		23.8
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 127
1 2 3 4 5 6 range
A 62.7
(-2.1)
A 		99.7
(0.6)
P 		133.2
(3)
P 		64.5
(-2)
M 		56.2
(-2.6)
P 		50.4
(-3)
A 		83
B 73.2
(0.3)
P 		108.5
(3)
P 		89
(1.5)
P 		70
(0.1)
P 		59.8
(-0.7)
P 		28.7
(-3)
A 		80
C 70.5
(-0.3)
P 		119
(2)
P 		140
(3)
P 		76.4
(-0)
A 		77.6
(0)
P 		13.1
(-3)
A 		127
avr 68.8
(-0.5) 		109.1
(2.2) 		120.7
(3) 		70.3
(-0.4) 		64.5
(-0.7) 		30.7
(-3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 36
1 2 3 4 range
A 38
(3)
P 		30.5
(1.7)
P 		29.4
(1.5)
P 		3.3
(-3)
A 		35
B 22.8
(2.7)
P 		23.8
(2.9)
P 		24
(3)
P 		1.9
(-3)
A 		22
C 32.5
(2.2)
P 		36.6
(3)
P 		34.7
(2.6)
P 		6.7
(-3)
M 		30
avr 31.1
(3) 		30.3
(2.8) 		29.4
(2.6) 		4
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 11.6
(-3)
A 		35.4
(3)
P 		29
(1.4)
P 		16.4
(-1.8)
M 		17
(-1.6)
P 		12.3
(-2.8)
A 		24
B 25.5
(0.5)
P 		36.1
(3)
P 		21.6
(-0.4)
P 		18.5
(-1.2)
P 		24.3
(0.2)
P 		10.7
(-3)
A 		25
C 26.1
(1.1)
P 		36.3
(3)
P 		35.6
(2.9)
P 		15.4
(-0.9)
A 		25.1
(0.9)
P 		4.4
(-3)
A 		32
avr 21.1
(-0.3) 		35.9
(3) 		28.7
(1.4) 		16.8
(-1.3) 		22.1
(-0.1) 		9.1
(-3) 		27
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185574_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15905
Sequence Type Exemplar sequence
Representative Public ID Y46H3B.2 NCBI
Target Description Y46H3B.2 /REP_DB=WormBase Gene ID /WP=CE24311 /TR=Q9N4W5 /GB=AAF60622.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071098 NCBI Caenorhabditis elegans Y46H3B.2 (Y46H3B.2) mRNA, complete cds. 11/11 A 
SNAP00000024240 ENSEMBL cdna:SNAP chromosome:CEL140:V:1757474:1760074:1 11/11 None
GENEFINDER00000024242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1757047:1765022:1 11/11 None
Y46H3B.2 ENSEMBL cdna:known chromosome:CEL140:V:1757047:1760074:1 gene:Y46H3B.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1757046-1760074(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y46H3B.2
Entrez Gene 178656 Entrez gene
SwissProt Q9N4W5 EMBL-EBI
WormBase CE35805 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF60622 Hypothetical protein Y46H3B.2 [Caenorhabditis elegans] ref|NP_503499.2| Y46H3B.2 [Caenorhabditis elegans] 0.0
blast AAF60621 Hypothetical protein Y46H3B.1 [Caenorhabditis elegans] ref|NP_503500.2| Y46H3B.1 [Caenorhabditis elegans] 0.0
blast CAE56908 Hypothetical protein CBG24749 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.2E-4
Pfam IPR001304 EMBL-EBI C-type lectin 2.3E-8
Pfam IPR001304 EMBL-EBI C-type lectin 2.3E-8
Pfam IPR001304 EMBL-EBI C-type lectin 9.3E-5
Pfam IPR001304 EMBL-EBI C-type lectin 4.7E-5
Sequence
Target Sequence 
>C. ELEGANS:185574_AT
tgtgcgtacatgaacgtgaccgacaagctttggtactcggacggggaatgtaccacggaa
cgacaagtgctctgccaatatgtgctcccaacaccaccgacaccgaatccaacgatttca
tggcaagatccatgcttctacgaaacgacaacttttaaatatttcgagtcattacacaat
gccaaatgctatagggtgtcctcagaaaaaaagcagtttgttgatgctgaaaatctgtgc
ttatccaaacatccattattcctgcatacccctaaactgacatcaattgagacaaaaatc
gaagaggatcaggttagaactttaatacacacacaacctcttgtcaatgagggaatgttt
tggtttgggttgaaacgggacccctcaaattcttcaaactgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCGTACATGAACGTGACCGACA 197 557 991 Antisense
TACTCGGACGGGGAATGTACCACGG 681 641 1024 Antisense
CGGAACGACAAGTGCTCTGCCAATA 259 243 1046 Antisense
ACCGAATCCAACGATTTCATGGCAA 399 89 1092 Antisense
GGCAAGATCCATGCTTCTACGAAAC 329 535 1112 Antisense
TGCCAAATGCTATAGGGTGTCCTCA 188 585 1170 Antisense
ATGCTGAAAATCTGTGCTTATCCAA 133 43 1214 Antisense
GCTTATCCAAACATCCATTATTCCT 651 303 1229 Antisense
GAACTTTAATACACACACAACCTCT 527 349 1307 Antisense
ACACACACAACCTCTTGTCAATGAG 244 111 1317 Antisense
GGACCCCTCAAATTCTTCAAACTGG 416 523 1368 Antisense
Sequence Source Affymetrix Proprietary Database