[Home] | [Total List]

[185572_at]

Description Y105E8A.D /REP_DB=WormBase Gene ID /WP=CE26955 /TR=Q9NF21 /GB=CAB81912.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 81      6grp_high1_10_10 > 18      4grp_highest_8_8 > 17      4grp_high_8_8 > 61      6grp_highest_nonorm > 71      6grp_total > 19      4grp_total > 58      6grp_highest_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 291
1 2 3 4 range
A 390.8
(3)
P 		386.9
(2.8)
P 		359.5
(1.8)
P 		240.2
(-3)
P 		151
B 315.2
(-3)
P 		366.3
(-1.6)
P 		531.1
(3)
P 		313.8
(-3)
P 		217
C 359.8
(-1.1)
P 		477.3
(3)
P 		432.9
(1.4)
P 		305.9
(-3)
P 		171
avr 355.3
(-0.3) 		410.2
(1.8) 		441.2
(3) 		286.6
(-3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 399
1 2 3 4 5 6 range
A 607.4
(3)
P 		324.5
(-1.3)
P 		212.6
(-3)
P 		326.4
(-1.3)
P 		290.5
(-1.8)
P 		330.3
(-1.2)
P 		395
B 300.9
(-0.4)
P 		283.5
(-0.9)
P 		208
(-3)
P 		332.7
(0.5)
P 		424.4
(3)
P 		344.9
(0.8)
P 		216
C 435.1
(3)
P 		311.1
(-0.9)
P 		333.5
(-0.2)
P 		301.9
(-1.2)
P 		262.6
(-2.4)
P 		243.7
(-3)
P 		191
avr 447.8
(3) 		306.4
(-1.3) 		251.4
(-3) 		320.3
(-0.9) 		325.8
(-0.7) 		306.3
(-1.3) 		196
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 142.3
(3)
P 		84
(-0.3)
P 		94
(0.3)
P 		35.2
(-3)
P 		107
B 100.5
(0.6)
P 		90.5
(-0.5)
P 		123.1
(3)
P 		66.9
(-3)
P 		56
C 119.1
(1.1)
P 		137.2
(2.2)
P 		150.9
(3)
P 		51.6
(-3)
P 		99
avr 120.6
(2.8) 		103.9
(1.4) 		122.7
(3) 		51.2
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 126
1 2 3 4 5 6 range
A 112
(2.7)
P 		115.4
(3)
P 		46.3
(-3)
P 		82.8
(0.2)
P 		87.6
(0.6)
P 		80.4
(-0)
P 		69
B 104.7
(-0.3)
P 		94.4
(-0.8)
P 		50.5
(-3)
P 		88.1
(-1.1)
P 		172.4
(3)
P 		128.6
(0.8)
P 		122
C 161.3
(3)
P 		94.9
(-1)
P 		84.9
(-1.6)
P 		60.7
(-3)
P 		85
(-1.6)
P 		81.6
(-1.8)
P 		101
avr 126
(3) 		101.6
(0.8) 		60.6
(-3) 		77.2
(-1.5) 		115
(2) 		96.9
(0.3) 		65
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185572_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18811
Sequence Type Exemplar sequence
Representative Public ID Y105E8A.D NCBI
Target Description Y105E8A.D /REP_DB=WormBase Gene ID /WP=CE26955 /TR=Q9NF21 /GB=CAB81912.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170935(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170935 NCBI Caenorhabditis elegans Y105E8A.3 (Y105E8A.3) mRNA, complete cds. 11/11 A 
SNAP00000013320 ENSEMBL cdna:SNAP chromosome:CEL140:I:14355765:14375522:1 11/11 None
GENEFINDER00000013487 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14366779:14375522:1 11/11 None
Y105E8A.3 ENSEMBL cdna:known chromosome:CEL140:I:14366654:14375699:1 gene:Y105E8A.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14366709-14369295(+) 99.32 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.3
Entrez Gene 173299 Entrez gene
SwissProt Q8WQB6 EMBL-EBI
WormBase CE32233 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.12368.1.S1_S_AT similar to zinc transporter ZTL1 isoform 1 cfa
CHICKEN:GGA.8469.1.S1_AT solute carrier family 30 (zinc transporter), member 5 gga
CHICKEN:GGAAFFX.11883.1.S1_AT solute carrier family 30 (zinc transporter), member 5 gga
HG-U133_PLUS_2:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A_2:218989_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HU35KSUBA:RC_AA598723_AT solute carrier family 30 (zinc transporter), member 5 hs
HU35KSUBB:RC_R77771_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133A_2:220181_X_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:G13443011_3P_X_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:G13443011_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS2AFFX.1.207.S1_3P_S_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS2AFFX.1.207.S1_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS.165490.0.A1_3P_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:HS.129445.2.S1_3P_A_AT solute carrier family 30 (zinc transporter), member 5 hs
U133_X3P:1555334_3P_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:1555334_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:232432_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133B:232432_S_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133_PLUS_2:243166_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U133B:243166_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95B:59029_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:65193_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:66873_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95D:91769_AT solute carrier family 30 (zinc transporter), member 5 hs
HG-U95C:58138_AT Solute carrier family 30 (zinc transporter), member 5 hs
RG-U34C:RC_AI146110_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
RAE230A:1373821_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
RAT230_2:1373821_AT solute carrier family 30 (zinc transporter), member 5 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8324 cation transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAD21657 Hypothetical protein Y105E8A.3 [Caenorhabditis elegans] ref|NP_740931.2| Y105E8A.3 [Caenorhabditis elegans] 0.0
blast CAE64126 Hypothetical protein CBG08742 [Caenorhabditis briggsae] 0.0
blast NP_001015911 solute carrier family 30 (zinc transporter), member 5 [Xenopus tropicalis] 1.0E-122
Protein Domains
Database ID Description E-Value
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.1E-85
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.1E-85
Pfam IPR002524 EMBL-EBI Cation efflux protein 9.4E-74
Pfam IPR002524 EMBL-EBI Cation efflux protein 1.6E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_740931.2 16 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611
Y105E8A.3 16 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611
SNAP00000013320 16 13-35,39-58,71-93,103-121,134-148,175-197,218-240,250-272,285-307,317-334,392-414,424-446,459-481,496-513,550-572,577-599
GENEFINDER00000013487 17 21-43,53-70,83-105,115-133,146-160,187-209,230-252,262-284,297-319,329-346,404-426,436-458,471-493,508-525,562-584,589-611,764-786
Sequence
Target Sequence 
>C. ELEGANS:185572_AT
ggcggaaatatgtcaactccctccaaaacacgtggatttttcctgttaattgtcggattt
gtggcgcttttccttatggatagagacggaactattgaggatccacatcacaccacccac
gcccaccacagtggcctcaaccacctcttctatcatttaattggacttttcggaatggct
gatcataaaggaggtctatgtattctgctaatctcactgcttctccgtaccggctacgag
acgtctttccggcatttagctgtagaagttggcggtgcaaagaggcttcacacacttgtt
acggctggaagtgctgtctgcctaacgcctgtagccgtactatcatgggctctttcctca
agctccggagcttcgataggctatttccactacgctgctcttctcgtaatcattgctgta
tttgtgtttgtactcgatttctacgctgaaagtatatgcttccaacacgttgctgatcca
gttatggctgcagctcgttggtcctctgttaccatgttctcgtgtgcatttgggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCGGAAATATGTCAACTCCCTCCA 224 541 415 Antisense
ATTTGTGGCGCTTTTCCTTATGGAT 45 19 471 Antisense
AACCACCTCTTCTATCATTTAATTG 160 149 553 Antisense
TATGTATTCTGCTAATCTCACTGCT 182 657 611 Antisense
ACGTCTTTCCGGCATTTAGCTGTAG 216 93 655 Antisense
GCTTCACACACTTGTTACGGCTGGA 232 305 699 Antisense
TACGGCTGGAAGTGCTGTCTGCCTA 50 647 714 Antisense
CTAACGCCTGTAGCCGTACTATCAT 107 227 736 Antisense
TTCGATAGGCTATTTCCACTACGCT 414 695 786 Antisense
TGCTCTTCTCGTAATCATTGCTGTA 250 581 810 Antisense
ACCATGTTCTCGTGTGCATTTGGGC 126 83 925 Antisense
Sequence Source Affymetrix Proprietary Database