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[185570_s_at]

Description Y105E8A.C /REP_DB=WormBase Gene ID /WP=CE25700 /TR=Q9NF22 /GB=CAB60843.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 64      6grp_total > 64      4grp_total > 59      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 204.8
(-0.6)
P 		227.3
(0.4)
A 		285.6
(3)
P 		150.3
(-3)
A 		135
B 210.9
(-2.4)
P 		297.9
(3)
P 		297.2
(3)
P 		201.9
(-3)
A 		96
C 277.6
(3)
P 		237.1
(0.8)
P 		207.2
(-0.8)
P 		167
(-3)
A 		111
avr 231.1
(0.9) 		254.1
(2.4) 		263.3
(3) 		173.1
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 223.1
(0.1)
M 		157
(-3)
P 		233.4
(0.6)
P 		284.6
(3)
P 		245.1
(1.1)
P 		261.6
(1.9)
P 		128
B 242.3
(-0.6)
A 		243.7
(-0.4)
P 		263.7
(3)
P 		257.7
(2)
P 		228.8
(-2.9)
P 		228.1
(-3)
P 		36
C 261.7
(1.6)
P 		254.5
(1)
P 		280.8
(3)
P 		203.1
(-2.9)
P 		201.2
(-3)
P 		247.3
(0.5)
P 		80
avr 242.4
(0.5) 		218.4
(-3) 		259.3
(3) 		248.5
(1.4) 		225
(-2) 		245.7
(1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 74.6
(3)
P 		49.3
(0.1)
A 		74.7
(3)
P 		22
(-3)
A 		53
B 67.2
(1.7)
P 		73.6
(3)
P 		68.9
(2.1)
P 		43
(-3)
A 		31
C 91.9
(3)
P 		68.2
(0.8)
P 		72.2
(1.1)
P 		28.2
(-3)
A 		64
avr 77.9
(3) 		63.7
(1.2) 		71.9
(2.2) 		31.1
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 56
1 2 3 4 5 6 range
A 41.1
(-3)
M 		55.8
(-0.3)
P 		50.8
(-1.2)
P 		72.2
(2.7)
P 		74
(3)
P 		63.7
(1.1)
P 		33
B 84.3
(1.2)
A 		81.1
(0.5)
P 		64
(-3)
P 		68.3
(-2.1)
P 		93
(3)
P 		85.1
(1.4)
P 		29
C 97
(3)
P 		77.6
(0.9)
P 		71.5
(0.3)
P 		40.9
(-3)
P 		65.1
(-0.4)
P 		82.8
(1.5)
P 		56
avr 74.1
(1.8) 		71.5
(0.9) 		62.1
(-2.4) 		60.5
(-3) 		77.4
(3) 		77.2
(2.9) 		17
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185570_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18803
Sequence Type Exemplar sequence
Representative Public ID Y105E8A.C NCBI
Target Description Y105E8A.C /REP_DB=WormBase Gene ID /WP=CE25700 /TR=Q9NF22 /GB=CAB60843.2 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170934(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170934 NCBI Caenorhabditis elegans Y105E8A.2 (Y105E8A.2) mRNA, complete cds. 11/11 None
SNAP00000013321 ENSEMBL cdna:SNAP chromosome:CEL140:I:14355855:14384135:-1 9/11 None
GENEFINDER00000013500 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14355855:14366425:-1 11/11 None
Y105E8A.2 ENSEMBL cdna:known chromosome:CEL140:I:14355632:14366443:-1 gene:Y105E8A.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14355785-14366356(-) 98.28 100.0
Public Domain and Genome References
Gene Title
Ensembl Y105E8A.2
Entrez Gene 173298 Entrez gene
SwissProt Q9NF22 EMBL-EBI
WormBase CE34218 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1606058_AT similar to chromosome 2 open reading frame 30 cfa
CANINE:1604034_AT similar to chromosome 2 open reading frame 30 cfa
CANINE_2:CFA.3321.1.S1_AT similar to chromosome 2 open reading frame 30 cfa
CANINE_2:CFAAFFX.4983.1.S1_S_AT similar to chromosome 2 open reading frame 30 cfa
DROSOPHILA_2:1631745_AT dm
DROSGENOME1:142421_AT dm
CHICKEN:GGA.4334.1.S1_AT similar to RIKEN cDNA 4933407N01 gga
CHICKEN:GGA.4334.2.S1_A_AT similar to RIKEN cDNA 4933407N01 gga
HU35KSUBA:AA393432_S_AT chromosome 2 open reading frame 30 hs
U133_X3P:HS.7100.0.A2_3P_AT chromosome 2 open reading frame 30 hs
U133_X3P:HS.7100.0.A1_3P_AT chromosome 2 open reading frame 30 hs
HG-U133_PLUS_2:224628_AT chromosome 2 open reading frame 30 hs
HG-U133B:224628_AT chromosome 2 open reading frame 30 hs
HG-U133_PLUS_2:224630_AT chromosome 2 open reading frame 30 hs
HG-U133B:224630_AT chromosome 2 open reading frame 30 hs
HG-U95B:46250_AT chromosome 2 open reading frame 30 hs
HG-U133_PLUS_2:244452_AT Chromosome 2 open reading frame 30 hs
HG-U133B:244452_AT Chromosome 2 open reading frame 30 hs
HG-U95C:61414_AT Chromosome 2 open reading frame 30 hs
HG-U95D:68107_AT Chromosome 2 open reading frame 30 hs
HG-U95D:68320_AT Chromosome 2 open reading frame 30 hs
HU35KSUBD:RC_AA421791_AT Chromosome 2 open reading frame 30 hs
U133_X3P:HS.98364.0.A1_3P_AT Chromosome 2 open reading frame 30 hs
MOUSE430_2:1451449_AT RIKEN cDNA 4933407N01 gene mm
MOE430A:1451449_AT RIKEN cDNA 4933407N01 gene mm
MOUSE430A_2:1451449_AT RIKEN cDNA 4933407N01 gene mm
MG-U74BV2:108371_AT RIKEN cDNA 4933407N01 gene mm
MOE430A:1424693_AT RIKEN cDNA 4933407N01 gene mm
MOUSE430A_2:1424693_AT RIKEN cDNA 4933407N01 gene mm
MOUSE430_2:1424693_AT RIKEN cDNA 4933407N01 gene mm
MG-U74CV2:134743_AT RIKEN cDNA 4933407N01 gene (4933407N01Rik), mRNA mm
MOE430B:1440851_AT RIKEN cDNA 4933407N01 gene (4933407N01Rik), mRNA mm
MOUSE430_2:1440851_AT RIKEN cDNA 4933407N01 gene (4933407N01Rik), mRNA mm
MG-U74CV2:169267_AT RIKEN cDNA 4933407N01 gene (4933407N01Rik), mRNA mm
RG-U34B:RC_AI009492_AT similar to hypothetical protein CL25084 (predicted) rn
RAE230A:1373346_AT similar to hypothetical protein CL25084 (predicted) rn
RAT230_2:1373346_AT similar to hypothetical protein CL25084 (predicted) rn
RAE230B:1395331_AT similar to hypothetical protein CL25084 (predicted) rn
RAT230_2:1395331_AT similar to hypothetical protein CL25084 (predicted) rn
RAE230A:1390734_AT Similar to hypothetical protein CL25084 (predicted) rn
RAT230_2:1390734_AT Similar to hypothetical protein CL25084 (predicted) rn
RG-U34A:RC_AA894155_AT Similar to hypothetical protein CL25084 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAB60843 Hypothetical protein Y105E8A.2 [Caenorhabditis elegans] ref|NP_740930.2| Y105E8A.2 [Caenorhabditis elegans] 0.0
blast CAE64125 Hypothetical protein CBG08741 [Caenorhabditis briggsae] 0.0
blast CAC48119 Hypothetical protein Y105E8A.5 [Caenorhabditis elegans] ref|NP_740933.1| BBS (Bardet-Biedl Syndrome) protein family member (bbs-1) [Caenorhabditis elegans] 0.0
blast CAE64125 Hypothetical protein CBG08741 [Caenorhabditis briggsae] 1.0E-136
blast AAH44498 Zgc:55819 [Danio rerio] ref|NP_955464.1| hypothetical protein LOC368331 [Danio rerio] 3.0E-69
Protein Domains
Database ID Description E-Value
Pfam IPR001753 EMBL-EBI Enoyl-CoA hydratase/isomerase 4.7E-79
Sequence
Target Sequence 
>C. ELEGANS:185570_S_AT
acatcccgaatatcaactttccgagaaaaaagatcataaaattgtttgttggaatgaaga
tgcgaagaatgagaatgaagcgaaacctcagacacttcagagacttgatgattttcatga
ttcgacttttaaacgggaatataccgtttttacggatcaagatcctcagtattcagagaa
tactgaggaagaagatggtggtcttattgatgagaaggattttgagaagcttaaagagac
tcggcaggctgggtacattttgggcggtgttaaaagagacgtagaagttcgaatccgctg
cgccaccgccgatcacagtgctctatcgttttcaatgcacctaacagaacccagaacttg
tcaatacgtgctaacaattgatagtgaacgattctgtgagccacttcaatttgccgatga
ttatggattaattgagctgacacaagttgcgtcgagctctcaatca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCCCGAATATCAACTTTCCGAG 581 101 711 Antisense
GCGAAACCTCAGACACTTCAGAGAC 190 289 790 Antisense
GATGATTTTCATGATTCGACTTTTA 239 411 817 Antisense
TAAAGAGACTCGGCAGGCTGGGTAC 60 639 942 Antisense
CAGGCTGGGTACATTTTGGGCGGTG 300 207 955 Antisense
ACGTAGAAGTTCGAATCCGCTGCGC 15 95 989 Antisense
ATCACAGTGCTCTATCGTTTTCAAT 31 29 1022 Antisense
TCAATGCACCTAACAGAACCCAGAA 374 633 1042 Antisense
GAACCCAGAACTTGTCAATACGTGC 578 345 1057 Antisense
TCTGTGAGCCACTTCAATTTGCCGA 84 609 1103 Antisense
ACAAGTTGCGTCGAGCTCTCAATCA 97 113 1152 Antisense
Sequence Source Affymetrix Proprietary Database