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[185569_at]

Description Y102F5A.1 /REP_DB=WormBase Gene ID /WP=CE19293 /TR=Q9XWT8 /GB=CAA21557.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 34      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 33.5
(-0.2)
A 		55.1
(3)
A 		55.2
(3)
A 		14.5
(-3)
A 		41
B 3.5
(-3)
A 		28.3
(-0.6)
A 		9.8
(-2.4)
A 		66.3
(3)
A 		63
C 20.1
(-2.6)
A 		51.7
(3)
A 		17.9
(-3)
A 		37.9
(0.6)
A 		34
avr 19
(-3) 		45
(3) 		27.6
(-1) 		39.6
(1.8) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 26.7
(-3)
A 		27.3
(-2.9)
A 		55.3
(1.9)
A 		40.3
(-0.7)
A 		61.8
(3)
A 		31.7
(-2.1)
A 		35
B 20.2
(-1.9)
A 		63.7
(3)
A 		13.6
(-2.7)
A 		10.9
(-3)
A 		32.5
(-0.5)
A 		28.5
(-1)
A 		53
C 26.7
(-1.4)
A 		64.3
(3)
A 		22.4
(-1.9)
A 		13.3
(-3)
A 		34.8
(-0.5)
A 		18
(-2.4)
A 		51
avr 24.5
(-2.4) 		51.8
(3) 		30.4
(-1.2) 		21.5
(-3) 		43
(1.3) 		26.1
(-2.1) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 12.2
(1.9)
A 		12
(1.8)
A 		14.4
(3)
A 		2.1
(-3)
A 		12
B 1.1
(-3)
A 		7
(-0.3)
A 		2.3
(-2.4)
A 		14.1
(3)
A 		13
C 6.7
(-2.7)
A 		14.9
(3)
A 		6.2
(-3)
A 		6.4
(-2.9)
A 		9
avr 6.7
(-3) 		11.3
(3) 		7.6
(-1.8) 		7.5
(-2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 4.9
(-3)
A 		9.7
(-0.9)
A 		12
(0.1)
A 		10.2
(-0.7)
A 		18.7
(3)
A 		7.7
(-1.8)
A 		14
B 7
(-1.7)
A 		21.2
(3)
A 		3.3
(-2.9)
A 		2.9
(-3)
A 		13.2
(0.4)
A 		10.6
(-0.5)
A 		18
C 9.9
(-0.4)
A 		19.6
(3)
A 		5.7
(-1.9)
A 		2.7
(-3)
A 		11.3
(0.1)
A 		6
(-1.8)
A 		17
avr 7.3
(-2) 		16.8
(3) 		7
(-2.1) 		5.3
(-3) 		14.4
(1.7) 		8.1
(-1.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185569_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16541
Sequence Type Exemplar sequence
Representative Public ID Y102F5A.1 NCBI
Target Description Y102F5A.1 /REP_DB=WormBase Gene ID /WP=CE19293 /TR=Q9XWT8 /GB=CAA21557.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077571 NCBI Caenorhabditis elegans Y102F5A.1 (Y102F5A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000037929 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:11781196:11783676:-1 11/11 None
Y102F5A.1 ENSEMBL cdna:known chromosome:CEL140:X:11781196:11784251:-1 gene:Y102F5A.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037928 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11781195-11784251(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y102F5A.1
Entrez Gene 190864 Entrez gene
SwissProt Q9XWT8 EMBL-EBI
WormBase CE19293 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21557 Hypothetical protein Y102F5A.1 [Caenorhabditis elegans] ref|NP_509972.1| Y102F5A.1 [Caenorhabditis elegans] 0.0
blast CAE57337 Hypothetical protein CBG00271 [Caenorhabditis briggsae] 1.0E-153
blast CAE57337 Hypothetical protein CBG00271 [Caenorhabditis briggsae] 1.0E-147
Sequence
Target Sequence 
>C. ELEGANS:185569_AT
ctctcactgatcttctcgaacaagagtatatgaaagaacacgagtataatggtgatactc
tttgcacttgggaaatggaaaagtcctcttcggcctttcatttgaactccactgagcttc
ctaaacctaaactgtcaaaaacaaactattttccatctttgttcggagaggcttccaaca
agaaaatggcagacgacggacttcaacgaaaacacgggactgttgatacacccattctca
aagaaagcgaagctcaaaagaaatcaatagcaaagcgtaaaagacatgaacgacttctca
aagcaagtgaatggtgccgagttactgatgaagataaagcaacattagtggaaatcaaaa
tccggcaacgtcttctcttgatacaacattatattcggggttggcaagacatgggcgcca
aagatgcaaccatttcaaaatggctaattgaagacatcagcaaacctctacacactcgcc
gctttgccagttttgagtaccatcatttcattccatctcatgttcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCTCACTGATCTTCTCGAACAAGA 18 231 599 Antisense
ATGGTGATACTCTTTGCACTTGGGA 241 51 647 Antisense
TCTTCGGCCTTTCATTTGAACTCCA 126 615 685 Antisense
TGAACTCCACTGAGCTTCCTAAACC 4 575 701 Antisense
TCCATCTTTGTTCGGAGAGGCTTCC 418 591 750 Antisense
ATGGCAGACGACGGACTTCAACGAA 322 51 784 Antisense
CGGGACTGTTGATACACCCATTCTC 599 241 813 Antisense
GCAACGTCTTCTCTTGATACAACAT 113 321 963 Antisense
GAAGACATCAGCAAACCTCTACACA 542 339 1048 Antisense
CGCTTTGCCAGTTTTGAGTACCATC 660 251 1078 Antisense
TTTCATTCCATCTCATGTTCTTCAA 189 673 1104 Antisense
Sequence Source Affymetrix Proprietary Database