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[185568_at]

Description T28C12.1 /REP_DB=WormBase Gene ID /WP=CE14337 /TR=O16698 /GB=AAB66156.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 20      6grp_total > 34      4grp_total > 19      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 65.2
(-3)
P 		127.6
(-0.3)
A 		68.2
(-2.9)
A 		203.1
(3)
P 		138
B 75.2
(-0.2)
P 		32.7
(-3)
A 		35.7
(-2.8)
P 		125.1
(3)
P 		92
C 73.7
(-2.1)
P 		126.1
(0.7)
P 		57.2
(-3)
A 		167.6
(3)
P 		110
avr 71.4
(-2) 		95.5
(-0.8) 		53.7
(-3) 		165.3
(3) 		112

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 167.4
(3)
A 		105.9
(-0.4)
P 		121.9
(0.5)
P 		62.5
(-2.8)
A 		94.3
(-1)
A 		59.1
(-3)
P 		108
B 135
(1.5)
P 		90.4
(-3)
P 		149.3
(3)
M 		124.3
(0.5)
P 		90.7
(-3)
A 		91.3
(-2.9)
P 		59
C 65.1
(-2.3)
A 		98
(0.8)
A 		85
(-0.4)
A 		59.9
(-2.7)
A 		57.2
(-3)
A 		120.8
(3)
P 		64
avr 122.5
(3) 		98.1
(-0.5) 		118.7
(2.5) 		82.2
(-2.8) 		80.7
(-3) 		90.4
(-1.6) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 23.7
(-0)
P 		27.7
(2)
A 		17.8
(-3)
A 		29.7
(3)
P 		12
B 24
(2.1)
P 		8.1
(-3)
A 		8.3
(-2.9)
P 		26.7
(3)
P 		19
C 24.4
(-1.4)
P 		36.3
(3)
P 		19.9
(-3)
A 		28.3
(0.1)
P 		16
avr 24
(1) 		24
(1) 		15.3
(-3) 		28.2
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 30.9
(1.3)
A 		37.6
(3)
P 		26.5
(0.1)
P 		15.8
(-2.6)
A 		28.5
(0.6)
A 		14.4
(-3)
P 		23
B 47
(3)
P 		30.1
(-3)
P 		36.3
(-0.8)
M 		32.9
(-2)
P 		36.9
(-0.6)
A 		34
(-1.6)
P 		17
C 24.1
(-0.4)
A 		29.9
(0.8)
A 		21.6
(-1)
A 		12
(-3)
A 		18.5
(-1.6)
A 		40.4
(3)
P 		28
avr 34
(3) 		32.5
(2.3) 		28.1
(0.4) 		20.2
(-3) 		28
(0.4) 		29.6
(1.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11602
Sequence Type Exemplar sequence
Representative Public ID T28C12.1 NCBI
Target Description T28C12.1 /REP_DB=WormBase Gene ID /WP=CE14337 /TR=O16698 /GB=AAB66156.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072216 NCBI Caenorhabditis elegans T28C12.1 (T28C12.1) mRNA, complete cds. 11/11 None
SNAP00000017149 ENSEMBL cdna:SNAP chromosome:CEL140:V:6334535:6336602:1 11/11 None
GENEFINDER00000017157 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6334535:6336602:1 11/11 None
T28C12.1 ENSEMBL cdna:known chromosome:CEL140:V:6334535:6336602:1 gene:T28C12.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6334534-6336602(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T28C12.1
Entrez Gene 189037 Entrez gene
SwissProt O16698 EMBL-EBI
WormBase CE14337 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66156 Hypothetical protein T28C12.1 [Caenorhabditis elegans] ref|NP_504617.1| T28C12.1 [Caenorhabditis elegans] 0.0
blast CAE71865 Hypothetical protein CBG18913 [Caenorhabditis briggsae] 0.0
blast AAB66157 Hypothetical protein T28C12.2 [Caenorhabditis elegans] ref|NP_504616.1| T28C12.2 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504617.1 12 21-43,73-95,107-129,133-155,168-190,205-227,248-270,293-315,328-347,378-400,421-443,448-470
T28C12.1 12 21-43,73-95,107-129,133-155,168-190,205-227,248-270,293-315,328-347,378-400,421-443,448-470
SNAP00000017149 12 20-42,57-79,91-113,117-139,152-174,189-211,232-254,277-299,312-331,362-384,405-427,432-454
GENEFINDER00000017157 12 20-42,57-79,91-113,117-139,152-174,189-211,232-254,277-299,312-331,362-384,405-427,432-454
Sequence
Target Sequence 
>C. ELEGANS:185568_AT
tggactaacatttttccttctctaccagcttttcatgtatccatggggattctactctgg
acctttgaactttttacctaaaggagttgaaacaaaagtcgccggaggatgttattcgga
gtatctctggtgtaatgacacaactcgtgttccacttttcatatatttattctgctttat
tgttttctttggtgttgcgttcccattcgtagagacacctgctccagcactgttctctga
aatcttagggccaaggaaacaaggcacaatgcagggattcttctcgttcgggggaagcct
tgccccagttattgcttctatttcttccacagcaatattcaaatacagcgggtatcgtta
cgtgattgttctccaagcatcaactcttcttgttgccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGACTAACATTTTTCCTTCTCTAC 514 547 1002 Antisense
TTCTCTACCAGCTTTTCATGTATCC 675 691 1019 Antisense
GGATTCTACTCTGGACCTTTGAACT 284 509 1048 Antisense
ACACAACTCGTGTTCCACTTTTCAT 76 111 1139 Antisense
TATTGTTTTCTTTGGTGTTGCGTTC 185 665 1179 Antisense
TGTTGCGTTCCCATTCGTAGAGACA 126 559 1194 Antisense
TGCTCCAGCACTGTTCTCTGAAATC 75 583 1221 Antisense
GATTCTTCTCGTTCGGGGGAAGCCT 611 429 1277 Antisense
GAAGCCTTGCCCCAGTTATTGCTTC 144 343 1295 Antisense
GTTACGTGATTGTTCTCCAAGCATC 624 445 1358 Antisense
AAGCATCAACTCTTCTTGTTGCCAT 552 151 1376 Antisense
Sequence Source Affymetrix Proprietary Database