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[185567_at]

Description H02F09.1 /REP_DB=WormBase Gene ID /WP=CE19477 /TR=O76604 /GB=AAC64621.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 42      6grp_cgc > 03      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 27.6
(-2.3)
A 		57.5
(3)
A 		47.7
(1.3)
A 		23.7
(-3)
A 		34
B 7.7
(-3)
A 		70.8
(3)
A 		23.6
(-1.5)
A 		9.8
(-2.8)
A 		63
C 27.6
(-3)
A 		32.4
(-2.2)
A 		27.6
(-3)
A 		62.8
(3)
A 		35
avr 21
(-3) 		53.6
(3) 		33
(-0.8) 		32.1
(-1) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 30.1
(-0.3)
A 		29.8
(-0.3)
A 		20.1
(-1.3)
A 		2.5
(-3)
A 		24.5
(-0.9)
A 		64
(3)
A 		62
B 59.3
(3)
A 		47.8
(1.2)
A 		29.9
(-1.6)
A 		48
(1.2)
A 		38.7
(-0.2)
A 		20.7
(-3)
A 		39
C 27.2
(-0.9)
A 		30
(-0.4)
A 		48.2
(3)
A 		39.1
(1.3)
A 		46.3
(2.6)
A 		15.9
(-3)
A 		32
avr 38.9
(3) 		35.9
(1) 		32.7
(-1.1) 		29.9
(-3) 		36.5
(1.4) 		33.5
(-0.6) 		9
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 10.1
(1.4)
A 		12.5
(3)
A 		12.5
(3)
A 		3.5
(-3)
A 		9
B 2.4
(-2.9)
A 		17.5
(3)
A 		5.5
(-1.7)
A 		2.1
(-3)
A 		15
C 9.1
(-3)
A 		9.3
(-2.2)
A 		9.6
(-1)
A 		10.6
(3)
A 		2
avr 7.2
(-1.6) 		13.1
(3) 		9.2
(-0) 		5.4
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 5.6
(-1)
A 		10.6
(1)
A 		4.4
(-1.5)
A 		0.6
(-3)
A 		7.4
(-0.3)
A 		15.6
(3)
A 		15
B 20.6
(3)
A 		15.9
(0.9)
A 		7.3
(-3)
A 		12.7
(-0.6)
A 		15.7
(0.8)
A 		7.7
(-2.8)
A 		13
C 10.1
(-0)
A 		9.2
(-0.6)
A 		12.3
(1.3)
A 		7.9
(-1.4)
A 		15
(3)
A 		5.3
(-3)
A 		10
avr 12.1
(2.4) 		11.9
(2.1) 		8
(-2) 		7.1
(-3) 		12.7
(3) 		9.5
(-0.4) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185567_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18090
Sequence Type Exemplar sequence
Representative Public ID H02F09.1 NCBI
Target Description H02F09.1 /REP_DB=WormBase Gene ID /WP=CE19477 /TR=O76604 /GB=AAC64621.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075897
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
B0344.2 ENSEMBL cdna:known chromosome:CEL140:X:1576633:1590890:1 gene:B0344.2 A 
SNAP00000005920 ENSEMBL cdna:SNAP chromosome:CEL140:X:1576633:1578208:1 None
GENEFINDER00000005940 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1576633:1590890:1 None
NM_075897 NCBI Caenorhabditis elegans WaRThog (hedgehog-like family) family member (wrt-9) (wrt-9) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1576632-1578318(+) 91.88 100.0
Public Domain and Genome References
Gene Title
Gene Symbol wrt-9
Ensembl B0344.2
Entrez Gene 181931 Entrez gene
SwissProt O61737 EMBL-EBI
WormBase CE33963 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16982 Warthog (hedgehog-like family) protein 9 [Caenorhabditis elegans] ref|NP_508298.2| WaRThog (hedgehog-like family) family member (wrt-9) [Caenorhabditis elegans] 0.0
blast CAE70009 Hypothetical protein CBG16423 [Caenorhabditis briggsae] 1.0E-160
blast AAC16982 Warthog (hedgehog-like family) protein 9 [Caenorhabditis elegans] ref|NP_508298.2| WaRThog (hedgehog-like family) family member (wrt-9) [Caenorhabditis elegans] 4.0E-49
blast T33371 hypothetical protein H02F09.1 - Caenorhabditis elegans 4.0E-42
blast T33371 hypothetical protein H02F09.1 - Caenorhabditis elegans 5.0E-41
Sequence
Target Sequence 
>C. ELEGANS:185567_AT
ttgtatggccgagccgcaggaggacgaggaggacagcgtgttcattgccaatacagctgg
acaggaagatggatttttccgtgaaggtgataggcagaagaagagctatacgcagagtta
taagcctaaagcgatcaattatcaactgaattttaatgttctcaacgtatttttccatat
atttttttcaattcctccatctccaattcctcattccaaaacccgttatccacaatctaa
atcccccaaacacaaatatttcgcaattttttcgccgaaaattttcgcgcaagctatacg
aactttatttttttttagaaaatttatcaaaatttgccaattttttcagttatggaaaat
gaacataaaaactcaaaaaataattttttttccaacttcgcaaaactttttagacttagt
tttttatctagctagtcttat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTATGGCCGAGCCGCAGGAGGAC 641 685 309 Antisense
CGAGGAGGACAGCGTGTTCATTGCC 61 251 333 Antisense
GTTCATTGCCAATACAGCTGGACAG 655 443 348 Antisense
GGATTTTTCCGTGAAGGTGATAGGC 472 505 379 Antisense
GTTCTCAACGTATTTTTCCATATAT 635 443 466 Antisense
TATATTTTTTTCAATTCCTCCATCT 588 661 486 Antisense
TCATTCCAAAACCCGTTATCCACAA 290 615 519 Antisense
ATCTAAATCCCCCAAACACAAATAT 130 31 543 Antisense
TTTCGCCGAAAATTTTCGCGCAAGC 462 669 578 Antisense
TCGCGCAAGCTATACGAACTTTATT 514 597 593 Antisense
TAGTTTTTTATCTAGCTAGTCTTAT 561 643 725 Antisense
Sequence Source Affymetrix Proprietary Database