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[185566_at]

Description C05E11.3 /REP_DB=WormBase Gene ID /WP=CE27654 /TR=Q17664 /GB=AAA96192.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 50      4grp_high_8_8 > 41      6grp_highest_nonorm > 82      6grp_total > 39      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 406.2
(3)
P 		293.9
(-0)
P 		213.9
(-2.2)
P 		184.9
(-3)
P 		221
B 393
(3)
P 		255
(-1.4)
P 		223.9
(-2.4)
P 		203.4
(-3)
P 		190
C 396.8
(3)
P 		224
(-2.4)
P 		219.7
(-2.5)
P 		204.3
(-3)
P 		193
avr 398.7
(3) 		257.6
(-1.2) 		219.2
(-2.4) 		197.5
(-3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 342.1
(2.8)
P 		276
(0.2)
P 		195.8
(-3)
P 		318.5
(1.8)
P 		347.9
(3)
P 		278.9
(0.3)
P 		152
B 372.7
(2.4)
P 		266.2
(-2.5)
P 		254.4
(-3)
P 		313.4
(-0.3)
P 		385
(3)
P 		341
(1)
P 		131
C 446.1
(3)
P 		304.9
(-0.6)
P 		212.6
(-3)
P 		341.2
(0.3)
P 		319.6
(-0.3)
P 		359.2
(0.8)
P 		234
avr 387
(3) 		282.4
(-0.8) 		220.9
(-3) 		324.4
(0.7) 		350.8
(1.7) 		326.4
(0.8) 		166
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 121
1 2 3 4 range
A 147.9
(3)
P 		63.8
(-1.2)
P 		55.9
(-1.6)
P 		27.1
(-3)
P 		121
B 125.3
(3)
P 		63
(-1.6)
P 		51.9
(-2.4)
P 		43.3
(-3)
P 		82
C 131.3
(3)
P 		64.4
(-1.1)
P 		76.6
(-0.4)
P 		34.4
(-3)
P 		97
avr 134.8
(3) 		63.7
(-1.3) 		61.5
(-1.4) 		34.9
(-3) 		100

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 123
1 2 3 4 5 6 range
A 63.1
(-1)
P 		98.2
(2.3)
P 		42.6
(-3)
P 		80.8
(0.7)
P 		105
(3)
P 		67.9
(-0.6)
P 		62
B 129.7
(1.3)
P 		88.6
(-1.3)
P 		61.8
(-3)
P 		83
(-1.7)
P 		156.4
(3)
P 		127.2
(1.1)
P 		95
C 165.4
(3)
P 		93
(-0.9)
P 		54.1
(-3)
P 		68.6
(-2.2)
P 		103.4
(-0.3)
P 		120.3
(0.6)
P 		111
avr 119.4
(2.8) 		93.3
(0.5) 		52.8
(-3) 		77.5
(-0.8) 		121.6
(3) 		105.1
(1.6) 		69
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185566_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15984
Sequence Type Exemplar sequence
Representative Public ID C05E11.3 NCBI
Target Description C05E11.3 /REP_DB=WormBase Gene ID /WP=CE27654 /TR=Q17664 /GB=AAA96192.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076384 NCBI Caenorhabditis elegans C05E11.3 (C05E11.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000025339 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4578219:4581146:1 11/11 None
SNAP00000025328 ENSEMBL cdna:SNAP chromosome:CEL140:X:4579504:4581146:1 11/11 None
C05E11.3 ENSEMBL cdna:known chromosome:CEL140:X:4579477:4581627:1 gene:C05E11.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4578219-4581147(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E11.3
Entrez Gene 180730 Entrez gene
SwissProt Q17664 EMBL-EBI
WormBase CE33029 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE68615 Hypothetical protein CBG14497 [Caenorhabditis briggsae] 1.0E-141
blast AAA96192 Hypothetical protein C05E11.3 [Caenorhabditis elegans] ref|NP_508785.2| C05E11.3 [Caenorhabditis elegans] gb|AAK69599.1| lysosomal-associated transmembrane protein [Caenorhabditis elegans] 1.0E-132
blast CAE68615 Hypothetical protein CBG14497 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508785.2 4 52-74,94-116,128-150,184-206
C05E11.3 4 52-74,94-116,128-150,184-206
GENEFINDER00000025339 4 74-96,116-138,150-172,206-228
SNAP00000025328 4 52-74,94-116,128-150,184-206
Sequence
Target Sequence 
>C. ELEGANS:185566_AT
ggtgccttcataattggttgcgttcacgttcttatgattctattcttcctgattcacagt
ttattcgtctacttccaacatgatggacggttacagcaggctcgtggtgtcaaggaaaac
tacgtctttggttcttttcttgcggaaatgatcggactcggtctgggtattttcgcggtt
ttcctactttttgtcgctttgtcccgaaattcggctctgctcgtcgtaccacatcttgtt
atgcaggtcatcgcaattctatgcttcatcgtcgtattagtatgtggaacaatagcattg
tgcactgattcagcagttttctaccgattaatcaatgcagcgccttttatggaacacccg
aataacaacacagtggctcttgatactggaaccatggtgcggatctactca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGCCTTCATAATTGGTTGCGTTC 587 501 205 Antisense
GATTCTATTCTTCCTGATTCACAGT 148 431 240 Antisense
CACAGTTTATTCGTCTACTTCCAAC 676 193 259 Antisense
GACGGTTACAGCAGGCTCGTGGTGT 500 375 290 Antisense
CTACGTCTTTGGTTCTTTTCTTGCG 131 227 324 Antisense
GATCGGACTCGGTCTGGGTATTTTC 224 411 354 Antisense
GTCGCTTTGTCCCGAAATTCGGCTC 684 469 397 Antisense
CTCGTCGTACCACATCTTGTTATGC 302 231 424 Antisense
GGTCATCGCAATTCTATGCTTCATC 386 503 450 Antisense
ATGCAGCGCCTTTTATGGAACACCC 656 43 539 Antisense
TGGAACCATGGTGCGGATCTACTCA 188 547 591 Antisense
Sequence Source Affymetrix Proprietary Database