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[185565_at]

Description F55E10.7 /REP_DB=WormBase Gene ID /WP=CE02787 /TR=Q20841 /GB=AAC46536.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 43      6grp_high1_10_10 > 34      4grp_high_8_8 > 03      6grp_highest_nonorm > 81      6grp_total > 11      4grp_total > 13      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 558
1 2 3 4 range
A 367
(-0.3)
P 		143.7
(-3)
P 		157.6
(-2.8)
A 		639
(3)
P 		495
B 344.6
(0.1)
P 		112.7
(-2.6)
A 		81.4
(-3)
A 		596.9
(3)
P 		516
C 376.4
(0.7)
P 		167.9
(-2.2)
M 		111.5
(-3)
P 		545.1
(3)
P 		434
avr 362.7
(0.1) 		141.4
(-2.7) 		116.8
(-3) 		593.7
(3) 		477

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 269.5
(0.3)
P 		331.5
(3)
P 		239.2
(-1.1)
P 		195
(-3)
P 		304
(1.8)
P 		252.5
(-0.5)
P 		137
B 317.2
(3)
P 		305.3
(2.3)
P 		262.9
(-0)
P 		269.7
(0.4)
P 		209.5
(-3)
P 		224.7
(-2.2)
P 		108
C 240.4
(-2.4)
P 		345.8
(3)
P 		300
(0.6)
P 		246.1
(-2.1)
P 		230
(-3)
P 		229.1
(-3)
P 		117
avr 275.7
(-0.4) 		327.5
(3) 		267.4
(-0.9) 		236.9
(-2.9) 		247.8
(-2.2) 		235.4
(-3) 		92
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 133.6
(3)
P 		31.2
(-3)
P 		41.2
(-2.4)
A 		93.5
(0.7)
P 		102
B 109.9
(2)
P 		27.8
(-2.5)
A 		18.9
(-3)
A 		127.2
(3)
P 		108
C 124.6
(3)
P 		48.3
(-2.3)
M 		38.9
(-3)
P 		91.9
(0.7)
P 		86
avr 122.7
(3) 		35.8
(-2.8) 		33
(-3) 		104.2
(1.8) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 49.7
(-3)
P 		117.9
(3)
P 		52.1
(-2.8)
P 		49.5
(-3)
P 		91.7
(0.7)
P 		61.5
(-1.9)
P 		68
B 110.4
(3)
P 		101.6
(1.9)
P 		63.8
(-3)
P 		71.4
(-2)
P 		85.1
(-0.3)
P 		83.8
(-0.4)
P 		47
C 89.1
(1.2)
P 		105.5
(3)
P 		76.3
(-0.1)
P 		49.5
(-3)
P 		74.4
(-0.3)
P 		76.7
(-0.1)
P 		56
avr 83.1
(0.1) 		108.3
(3) 		64.1
(-2.1) 		56.8
(-3) 		83.7
(0.1) 		74
(-1) 		52
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185565_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16202
Sequence Type Exemplar sequence
Representative Public ID F55E10.7 NCBI
Target Description F55E10.7 /REP_DB=WormBase Gene ID /WP=CE02787 /TR=Q20841 /GB=AAC46536.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077015(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077015 NCBI Caenorhabditis elegans F55E10.7 (F55E10.7) mRNA, complete cds. 11/11 None
SNAP00000011819 ENSEMBL cdna:SNAP chromosome:CEL140:X:8348889:8350785:-1 11/11 None
GENEFINDER00000011823 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8348889:8350776:-1 11/11 None
F55E10.7 ENSEMBL cdna:known chromosome:CEL140:X:8348475:8350997:-1 gene:F55E10.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8348887-8350472(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55E10.7
Entrez Gene 181089 Entrez gene
SwissProt Q20841 EMBL-EBI
WormBase CE02787 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC46536 Hypothetical protein F55E10.7 [Caenorhabditis elegans] ref|NP_509416.1| F55E10.7 [Caenorhabditis elegans] 0.0
blast CAE74887 Hypothetical protein CBG22750 [Caenorhabditis briggsae] 0.0
blast CAB05904 Hypothetical protein T02D1.6 [Caenorhabditis elegans] ref|NP_503107.2| T02D1.6 [Caenorhabditis elegans] 1.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.1E-22
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.5E-24
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.5E-24
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509416.1 3 60-79,113-135,155-177
F55E10.7 3 60-79,113-135,155-177
SNAP00000011819 6 37-59,85-107,164-183,222-244,259-281,338-360
GENEFINDER00000011823 6 34-56,82-104,161-180,219-241,256-278,335-357
Sequence
Target Sequence 
>C. ELEGANS:185565_AT
tttacattctctcacatatgcccaatctgcattcaactggctcttctattcctttctcaa
ccgcaacctacgctcgaacaacggccgaggaaacggaacacgatcagccgctaacacatc
cgtatttgataacggaaacgcaacaagcacagtcaacacttctttgacaccgatttggaa
gaatattcagcaaatgggaagtcatatcaaaactgctggacttgacactcgttctgcttt
gatgaagaagtcgccgtttaagggaaaatccaaaattcagtctagaagtgccgcctacct
cgattgctcatctgctcacatgctcagaccgtcatctgaaaacacgttgagttcctcgct
tcttgacattccaagaaggccatcattaattccaagacaagaaccgtcgcttgtcggaaa
agctctttctttcacaaatattccgcagccgcaataccaacgaatagagccgaaggagga
atcttctcacggagcagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTACATTCTCTCACATATGCCCAA 462 673 729 Antisense
GCCCAATCTGCATTCAACTGGCTCT 392 287 748 Antisense
ACCTACGCTCGAACAACGGCCGAGG 457 85 794 Antisense
AGCCGCTAACACATCCGTATTTGAT 309 83 834 Antisense
AACACTTCTTTGACACCGATTTGGA 569 135 883 Antisense
AAAACTGCTGGACTTGACACTCGTT 183 131 937 Antisense
GACACTCGTTCTGCTTTGATGAAGA 201 367 952 Antisense
AATTCAGTCTAGAAGTGCCGCCTAC 683 175 1002 Antisense
AAAACACGTTGAGTTCCTCGCTTCT 128 131 1067 Antisense
TCTTTCACAAATATTCCGCAGCCGC 541 615 1156 Antisense
GGAGGAATCTTCTCACGGAGCAGTT 136 515 1203 Antisense
Sequence Source Affymetrix Proprietary Database