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[185564_at]

Description K08D10.9 /REP_DB=WormBase Gene ID /WP=CE07361 /TR=Q21317 /GB=AAA98027.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 77      4grp_total > 23      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 45.7
(3)
A 		2.8
(-3)
A 		32.6
(1.2)
A 		10.9
(-1.9)
A 		43
B 52.2
(3)
A 		33
(0.6)
A 		3.7
(-3)
A 		5.6
(-2.8)
A 		49
C 10.6
(-2.5)
A 		8.8
(-2.7)
A 		5.1
(-3)
A 		70.7
(3)
A 		66
avr 36.2
(3) 		14.9
(-2.7) 		13.8
(-3) 		29.1
(1.1) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 6.5
(-2.9)
A 		20.1
(-1.3)
A 		23.8
(-0.9)
A 		34.8
(0.3)
A 		5.3
(-3)
A 		58.4
(3)
P 		53
B 11.9
(-1.8)
A 		10.3
(-2.1)
A 		15.5
(-1.3)
A 		4.2
(-3)
A 		32.7
(1.3)
A 		44.1
(3)
A 		40
C 11.3
(-1.6)
A 		6.8
(-2.5)
A 		7
(-2.5)
A 		4.4
(-3)
A 		10
(-1.8)
A 		33.5
(3)
A 		29
avr 9.9
(-3) 		12.4
(-2.6) 		15.4
(-2.1) 		14.5
(-2.2) 		16
(-2) 		45.3
(3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 16.6
(3)
A 		0.6
(-3)
A 		8.5
(-0)
A 		1.6
(-2.6)
A 		16
B 16.7
(3)
A 		8.1
(-0.3)
A 		0.9
(-3)
A 		1.2
(-2.9)
A 		16
C 3.5
(-2)
A 		2.5
(-2.6)
A 		1.8
(-3)
A 		11.9
(3)
A 		10
avr 12.3
(3) 		3.7
(-3) 		3.7
(-3) 		4.9
(-2.2) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 1.2
(-3)
A 		7.1
(-0.3)
A 		5.2
(-1.2)
A 		8.8
(0.5)
A 		1.6
(-2.8)
A 		14.2
(3)
P 		13
B 4.2
(-1.8)
A 		3.4
(-2.1)
A 		3.8
(-1.9)
A 		1.1
(-3)
A 		13.3
(1.8)
A 		16.4
(3)
A 		15
C 4.2
(-1.1)
A 		2.1
(-2.3)
A 		1.8
(-2.5)
A 		0.9
(-3)
A 		3.2
(-1.7)
A 		11.2
(3)
A 		10
avr 3.2
(-3) 		4.2
(-2.4) 		3.6
(-2.8) 		3.6
(-2.8) 		6
(-1.4) 		13.9
(3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185564_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11169
Sequence Type Exemplar sequence
Representative Public ID K08D10.9 NCBI
Target Description K08D10.9 /REP_DB=WormBase Gene ID /WP=CE07361 /TR=Q21317 /GB=AAA98027.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068098(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068098 NCBI Caenorhabditis elegans K08D10.9 (K08D10.9) mRNA, complete cds. 11/11 None
SNAP00000009680 ENSEMBL cdna:SNAP chromosome:CEL140:IV:4157799:4161782:1 11/11 None
GENEFINDER00000009693 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:4157400:4161782:1 11/11 None
K08D10.9 ENSEMBL cdna:known chromosome:CEL140:IV:4158184:4161782:1 gene:K08D10.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:4158189-4161788(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K08D10.9
Entrez Gene 187153 Entrez gene
SwissProt Q21317 EMBL-EBI
WormBase CE07361 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA98027 Hypothetical protein K08D10.9 [Caenorhabditis elegans] ref|NP_500499.1| K08D10.9 [Caenorhabditis elegans] 1.0E-151
blast AAA98027 Hypothetical protein K08D10.9 [Caenorhabditis elegans] ref|NP_500499.1| K08D10.9 [Caenorhabditis elegans] 1.0E-144
blast T15070 hypothetical protein R07C12.2 - Caenorhabditis elegans 1.0E-128
blast AAA98027 Hypothetical protein K08D10.9 [Caenorhabditis elegans] ref|NP_500499.1| K08D10.9 [Caenorhabditis elegans] 1.0E-127
blast AAA98026 Hypothetical protein K08D10.10 [Caenorhabditis elegans] ref|NP_500498.1| K08D10.10 [Caenorhabditis elegans] 1.0E-104
blast AAA98026 Hypothetical protein K08D10.10 [Caenorhabditis elegans] ref|NP_500498.1| K08D10.10 [Caenorhabditis elegans] 2.0E-94
blast AAA98026 Hypothetical protein K08D10.10 [Caenorhabditis elegans] ref|NP_500498.1| K08D10.10 [Caenorhabditis elegans] 1.0E-93
blast AAB94150 Hypothetical protein R07C12.1 [Caenorhabditis elegans] ref|NP_500497.1| R07C12.1 [Caenorhabditis elegans] 6.0E-89
Sequence
Target Sequence 
>C. ELEGANS:185564_AT
tgcggttctgttgttgtgattctctcgaaacgaaacccaaatgagaataatatttccaat
ctagtagccaaaattcgatcgcatcatggaatggttcatgtaatttcatcaaatactcca
tcaggtggatcccaaccactcaccctctatgacctctcatttaaaacaaatggactagcc
gattttcgaaatgatgatcaattcaacgattctcaaattcgtttttttgggctattttgg
cctgtagccatttattcggtgaatcctgtagtgtccggaaaaggctccattgtactgcct
tcactgttccacactaaacccaacgggacattctttgccggggtcgactttgcagtaact
gtacagaaccatggtcccattgatacattccaatcattttacctttcttggtacaatgct
tcatcatctaccaatggtggtttttatggatatccaggatccccatccaatgagaaaaat
agcacaattcgagcaggctatggaaacctcgatgctgctatctacaacatgaaacttgag
tactcatattctgacaatacgccaatcaaactccaaattaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGGTTCTGTTGTTGTGATTCTCT 228 583 163 Antisense
GGCCTGTAGCCATTTATTCGGTGAA 424 543 401 Antisense
GGTGAATCCTGTAGTGTCCGGAAAA 430 499 420 Antisense
AAAGGCTCCATTGTACTGCCTTCAC 447 121 442 Antisense
TTCCACACTAAACCCAACGGGACAT 136 657 469 Antisense
TTTGCCGGGGTCGACTTTGCAGTAA 376 669 496 Antisense
ATTCCAATCATTTTACCTTTCTTGG 177 7 549 Antisense
TATCCAGGATCCCCATCCAATGAGA 394 657 613 Antisense
CTATGGAAACCTCGATGCTGCTATC 655 223 660 Antisense
GAGTACTCATATTCTGACAATACGC 416 399 700 Antisense
TACGCCAATCAAACTCCAAATTAGA 470 647 720 Antisense
Sequence Source Affymetrix Proprietary Database