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[185563_at]

Description C56E10.3 /REP_DB=WormBase Gene ID /WP=CE04281 /TR=Q18893 /GB=AAA81154.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 43.4
(0.2)
A 		3
(-3)
A 		36
(-0.4)
A 		79.9
(3)
A 		77
B 61.3
(-1)
P 		43.2
(-3)
A 		51.9
(-2)
A 		96.8
(3)
M 		54
C 51.4
(0.1)
A 		9.5
(-2.5)
A 		2.1
(-3)
A 		98.8
(3)
P 		97
avr 52
(-0.3) 		18.6
(-3) 		30
(-2.1) 		91.8
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 34.8
(-0.5)
A 		9.9
(-3)
A 		69.4
(3)
A 		52.4
(1.3)
A 		33.7
(-0.6)
P 		48.6
(0.9)
A 		60
B 33
(-2.1)
M 		34.5
(-2)
A 		84.8
(3)
A 		45.6
(-0.9)
A 		33.1
(-2.1)
A 		24.4
(-3)
A 		60
C 49.7
(3)
A 		20.7
(-1.6)
A 		47.2
(2.6)
A 		11.6
(-3)
A 		33.5
(0.4)
A 		15.8
(-2.3)
A 		38
avr 39.2
(-0.7) 		21.7
(-3) 		67.1
(3) 		36.5
(-1) 		33.4
(-1.5) 		29.6
(-2) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.8
(3)
A 		0.7
(-3)
A 		9.4
(0.5)
A 		11.7
(1.4)
A 		15
B 19.6
(2.4)
P 		10.7
(-3)
A 		12
(-2.2)
A 		20.6
(3)
M 		10
C 17
(3)
A 		2.7
(-2.3)
A 		0.7
(-3)
A 		16.7
(2.9)
P 		16
avr 17.5
(3) 		4.7
(-3) 		7.4
(-1.7) 		16.3
(2.4) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 6.4
(-1.5)
A 		3.5
(-3)
A 		15.1
(3)
A 		13.3
(2.1)
A 		10.2
(0.5)
P 		11.8
(1.3)
A 		12
B 11.5
(-1.7)
M 		11.5
(-1.7)
A 		20.6
(3)
A 		12.1
(-1.4)
A 		13.4
(-0.8)
A 		9.1
(-3)
A 		12
C 18.4
(3)
A 		6.3
(-1.5)
A 		12
(0.6)
A 		2.3
(-3)
A 		10.8
(0.2)
A 		5.3
(-1.9)
A 		16
avr 12.1
(0.4) 		7.1
(-3) 		15.9
(3) 		9.2
(-1.6) 		11.5
(0) 		8.7
(-1.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185563_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15982
Sequence Type Exemplar sequence
Representative Public ID C56E10.3 NCBI
Target Description C56E10.3 /REP_DB=WormBase Gene ID /WP=CE04281 /TR=Q18893 /GB=AAA81154.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076716 NCBI Caenorhabditis elegans C56E10.3 (C56E10.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000019182 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:6645619:6651652:1 11/11 None
C56E10.3 ENSEMBL cdna:known chromosome:CEL140:X:6645609:6651708:1 gene:C56E10.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000019176 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6644796-6648367(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C56E10.3
Entrez Gene 183863 Entrez gene
SwissProt Q18893 EMBL-EBI
WormBase CE30922 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81155 Hypothetical protein C56E10.3 [Caenorhabditis elegans] ref|NP_509117.2| C56E10.3 [Caenorhabditis elegans] 0.0
blast AAA81155 Hypothetical protein C56E10.3 [Caenorhabditis elegans] ref|NP_509117.2| C56E10.3 [Caenorhabditis elegans] 1.0E-160
blast T15855 hypothetical protein C56E10.3 - Caenorhabditis elegans 1.0E-140
blast CAE65767 Hypothetical protein CBG10856 [Caenorhabditis briggsae] 2.0E-96
blast CAE65767 Hypothetical protein CBG10856 [Caenorhabditis briggsae] 3.0E-96
Sequence
Target Sequence 
>C. ELEGANS:185563_AT
ggttgagcagaacgccgaagcaagcttcttattgcaacaacaaaagaacaatgaaatgaa
tgaggctgtgcaacaatgggcggccgtcgatgtaaaagaggagaaactatacgttgactt
gacacatgaaacggaactcgagaaacagttcaaggaaagatatgacgagattacaaggaa
ccttgagcttctgggagcagaagctggatcagatgagaaactgtattatcagatggaaag
tgcctttgataacgatatgcgaaccgaaaagactttagaacaatatttaacccgcttgat
tgatgatgtttttgtgaatcaaaggcgattggaagatatacagattggaacatcaagggg
gcgagctaattttagacaagcggaaaaggctcttagagatcaaaggacaaggcaccgacg
cctaagctcacagataactgggactacggtaacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGAGCAGAACGCCGAAGCAAGC 317 507 336 Antisense
GAGGCTGTGCAACAATGGGCGGCCG 694 405 397 Antisense
AATGGGCGGCCGTCGATGTAAAAGA 39 163 410 Antisense
AACTATACGTTGACTTGACACATGA 594 139 440 Antisense
GGAACCTTGAGCTTCTGGGAGCAGA 122 531 512 Antisense
AAGTGCCTTTGATAACGATATGCGA 673 157 573 Antisense
ATATTTAACCCGCTTGATTGATGAT 704 17 618 Antisense
GGAACATCAAGGGGGCGAGCTAATT 78 529 682 Antisense
GATCAAAGGACAAGGCACCGACGCC 482 419 733 Antisense
ACCGACGCCTAAGCTCACAGATAAC 559 89 749 Antisense
CAGATAACTGGGACTACGGTAACTA 288 181 766 Antisense
Sequence Source Affymetrix Proprietary Database