[Home] | [Total List]

[185562_s_at]

Description Y75B8A.22 /REP_DB=WormBase Gene ID /WP=CE23033 /TR=Q9XW65 /GB=CAA22106.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 77      4grp_high_8_8 > 07      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 07      6grp_highest_sub > Da      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 94.9
(-2.1)
P 		104.8
(0.2)
P 		117.3
(3)
P 		90.8
(-3)
A 		27
B 115.1
(3)
P 		80.4
(-1.7)
A 		108.7
(2.1)
P 		70.7
(-3)
P 		44
C 119.8
(-1.5)
P 		106.7
(-3)
P 		113.1
(-2.3)
P 		159.5
(3)
P 		53
avr 109.9
(1.8) 		97.3
(-3) 		113
(3) 		107
(0.7) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 94.9
(-2.2)
P 		103.5
(-1.5)
P 		98.1
(-2)
P 		85.2
(-3)
P 		142.9
(1.6)
P 		159.8
(3)
P 		75
B 91.9
(-2.5)
P 		131.5
(-1)
P 		93.9
(-2.4)
P 		78.3
(-3)
P 		114.6
(-1.6)
P 		239.6
(3)
P 		161
C 114.7
(-2)
P 		102.8
(-2.5)
P 		95.9
(-2.8)
P 		114.4
(-2)
P 		90.8
(-3)
P 		227.9
(3)
P 		137
avr 100.5
(-2.6) 		112.6
(-2) 		96
(-2.8) 		92.6
(-3) 		116.1
(-1.8) 		209.1
(3) 		117
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 34.6
(3)
P 		22.7
(-0.4)
P 		30.7
(1.9)
P 		13.3
(-3)
A 		21
B 36.7
(3)
P 		19.9
(-1.7)
A 		25.2
(-0.2)
P 		15.1
(-3)
P 		22
C 39.7
(3)
P 		30.7
(-1.2)
P 		39.4
(2.9)
P 		26.9
(-3)
P 		13
avr 37
(3) 		24.4
(-1.1) 		31.8
(1.3) 		18.4
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 72
1 2 3 4 5 6 range
A 17.5
(-3)
P 		36.8
(1.5)
P 		21.4
(-2.1)
P 		21.6
(-2)
P 		43.1
(3)
P 		38.9
(2)
P 		26
B 32
(-2)
P 		43.8
(-1)
P 		22.8
(-2.8)
P 		20.7
(-3)
P 		46.6
(-0.7)
P 		89.3
(3)
P 		69
C 42.5
(-0.8)
P 		31.4
(-2.1)
P 		24.4
(-2.8)
P 		23
(-3)
P 		29.4
(-2.3)
P 		76.3
(3)
P 		53
avr 30.7
(-1.8) 		37.3
(-1) 		22.9
(-2.9) 		21.8
(-3) 		39.7
(-0.7) 		68.2
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185562_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6475
Sequence Type Exemplar sequence
Representative Public ID Y75B8A.22 NCBI
Target Description Y75B8A.22 /REP_DB=WormBase Gene ID /WP=CE23033 /TR=Q9XW65 /GB=CAA22106.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067193(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067193 NCBI Caenorhabditis elegans TIMeless (Drosophila/mammal) related family member (tim-1) (tim-1) mRNA, complete cds. 11/11 None
SNAP00000020085 ENSEMBL cdna:SNAP chromosome:CEL140:III:12240350:12250029:-1 11/11 None
GENEFINDER00000020162 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12240350:12250029:-1 11/11 None
Y75B8A.22 ENSEMBL cdna:known chromosome:CEL140:III:12240278:12250034:-1 gene:Y75B8A.22 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12240345-12250025(-) 98.52 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tim-1
Ensembl Y75B8A.22
Entrez Gene 176652 Entrez gene
SwissProt Q9XW65 EMBL-EBI
WormBase CE23033 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22106 Hypothetical protein Y75B8A.22 [Caenorhabditis elegans] ref|NP_499594.2| TIMeless (Drosophila/mammal) related family member (tim-1) [Caenorhabditis elegans] gb|AAF13189.1| TIM-1 [Caenorhabditis elegans] 0.0
blast CAE60075 Hypothetical protein CBG03593 [Caenorhabditis briggsae] 0.0
blast XP_685474 PREDICTED: similar to timeless homolog [Danio rerio] 2.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR006906 EMBL-EBI Timeless protein 1.0E-126
Pfam IPR007725 EMBL-EBI Timeless C-terminal 9.6E-20
Pfam IPR006906 EMBL-EBI Timeless protein 3.0E-26
Pfam IPR006906 EMBL-EBI Timeless protein 3.4E-105
Pfam IPR007725 EMBL-EBI Timeless C-terminal 9.6E-20
Pfam IPR007725 EMBL-EBI Timeless C-terminal 9.6E-20
Sequence
Target Sequence 
>C. ELEGANS:185562_S_AT
cgacatctagaatcactgggcgccacaattccggagagatcaaaaaaatccgagaaaaac
ggcaaaaaattcgatgattttttgaatgatgatgatgatgatagtgaaaatgatgtcgga
ggaggctcagaggatgatgaagaggaggaaatcgtgatgaagagtaaacgaattattccg
gattctgaggatgaagaggagcacattgagcaagaagaagctcaaaagaaattggaaaaa
gtcgctgaaaaaccaaatactctaatgggaatgattgctgggagaaaacggaagcttgct
cagctggaaagtgattctagtgatgaaagtgacgatgatgatagtgctgaaaaagaagag
aaaaagctaccagctgcagaggatgatagtgatttggaagaggatgctgttatttataag
agaagctatgtggatgctctactaacaggcggctcaattgctggaaatggaatcacagaa
acaagacgtgatacttcggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACATCTAGAATCACTGGGCGCCA 44 253 3481 Antisense
GGCGCCACAATTCCGGAGAGATCAA 28 543 3499 Antisense
GATGTCGGAGGAGGCTCAGAGGATG 248 407 3592 Antisense
GTAAACGAATTATTCCGGATTCTGA 351 457 3644 Antisense
GGGAGAAAACGGAAGCTTGCTCAGC 255 495 3760 Antisense
GCTTGCTCAGCTGGAAAGTGATTCT 79 307 3774 Antisense
AAGCTACCAGCTGCAGAGGATGATA 250 151 3844 Antisense
GAGAAGCTATGTGGATGCTCTACTA 561 391 3900 Antisense
ATGCTCTACTAACAGGCGGCTCAAT 120 41 3914 Antisense
CTAACAGGCGGCTCAATTGCTGGAA 555 225 3922 Antisense
GAAACAAGACGTGATACTTCGGAAG 584 353 3958 Antisense
Sequence Source Affymetrix Proprietary Database