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[185561_at]

Description T10H10.3 /REP_DB=WormBase Gene ID /WP=CE13579 /TR=P91441 /GB=AAB37990.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 97      4grp_highest_8_8 > 45      4grp_high_8_8 > 01      6grp_highest_nonorm > 82      6grp_total > 97      4grp_total > 15      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 328.6
(3)
P 		248
(-3)
P 		257.5
(-2.3)
P 		305.9
(1.3)
P 		81
B 292.3
(3)
P 		188.9
(-3)
P 		284.6
(2.6)
P 		291.5
(3)
P 		103
C 299.2
(3)
P 		245.6
(-0.7)
P 		211.2
(-3)
P 		280.5
(1.7)
P 		88
avr 306.7
(3) 		227.5
(-3) 		251.1
(-1.2) 		292.6
(1.9) 		79

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 141
1 2 3 4 5 6 range
A 284.4
(-3)
P 		369.5
(1.8)
P 		291.9
(-2.6)
P 		328.7
(-0.5)
P 		391.2
(3)
P 		381.9
(2.5)
P 		107
B 312.1
(-3)
P 		337.8
(-1.3)
P 		362.4
(0.3)
P 		317.6
(-2.6)
P 		402.5
(3)
P 		367.1
(0.7)
P 		90
C 311.6
(-3)
P 		318.2
(-2.7)
P 		362.6
(-0.3)
P 		376.2
(0.4)
P 		346.2
(-1.2)
P 		425.3
(3)
P 		114
avr 302.7
(-3) 		341.8
(-0.4) 		339
(-0.5) 		340.8
(-0.4) 		380
(2.2) 		391.4
(3) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 119.7
(3)
P 		53.8
(-2.3)
P 		67.3
(-1.2)
P 		44.8
(-3)
P 		75
B 93.2
(3)
P 		46.7
(-3)
P 		65.9
(-0.5)
P 		62.1
(-1)
P 		47
C 99
(3)
P 		70.6
(-0.3)
P 		73.6
(0.1)
P 		47.3
(-3)
P 		52
avr 104
(3) 		57
(-2.4) 		68.9
(-1) 		51.4
(-3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 111
1 2 3 4 5 6 range
A 52.4
(-3)
P 		131.4
(3)
P 		63.6
(-2.1)
P 		83.4
(-0.6)
P 		118
(2)
P 		93
(0.1)
P 		79
B 108.6
(-1.1)
P 		112.5
(-0.9)
P 		88
(-2.7)
P 		84.1
(-3)
P 		163.5
(3)
P 		136.9
(1)
P 		79
C 115.5
(0.6)
P 		97.1
(-1.1)
P 		92.3
(-1.5)
P 		75.7
(-3)
P 		112
(0.3)
P 		142.4
(3)
P 		67
avr 92.2
(-1.7) 		113.7
(0.9) 		81.3
(-3) 		81.1
(-3) 		131.2
(3) 		124.1
(2.1) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185561_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18599
Sequence Type Exemplar sequence
Representative Public ID T10H10.3 NCBI
Target Description T10H10.3 /REP_DB=WormBase Gene ID /WP=CE13579 /TR=P91441 /GB=AAB37990.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076017
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000007566 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2284146:2287181:-1 11/11 None
SNAP00000007560 ENSEMBL cdna:SNAP chromosome:CEL140:X:2284303:2287181:-1 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076017 7/11 Cross Hyb Matching Probes None
T10H10.3 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2284302-2285630(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE58896 Hypothetical protein CBG02143 [Caenorhabditis briggsae] 0.0
blast AAB37990 Hypothetical protein T10H10.3 [Caenorhabditis elegans] ref|NP_508418.2| T10H10.3 [Caenorhabditis elegans] 1.0E-176
blast CAE58896 Hypothetical protein CBG02143 [Caenorhabditis briggsae] 1.0E-164
blast AAB37990 Hypothetical protein T10H10.3 [Caenorhabditis elegans] ref|NP_508418.2| T10H10.3 [Caenorhabditis elegans] 1.0E-162
blast XP_624790 PREDICTED: similar to salvador homolog 1 [Apis mellifera] 3.0E-27
blast XP_624790 PREDICTED: similar to salvador homolog 1 [Apis mellifera] 4.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.5E-10
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.6E-11
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 1.5E-10
Pfam IPR001202 EMBL-EBI WW/Rsp5/WWP domain 2.6E-11
Sequence
Target Sequence 
>C. ELEGANS:185561_AT
agaacagggcacacgggaactcagcgtgattgaaaaaaggctggcttcccctcaaccgcc
aagattccaatcgcttcaaactcttcccagtgaacatttgatgacaattcaacaatatcg
atcttcttgtgactgttcaagtgatattccactgccggaaaactgggctgtagaattcac
cacagaaaaccagccatactacgttgatcatgccaaccggcgaactcattgggttcatcc
ttttgttcatgaaagtctcaagcctggatggaagaagtttttcgatccggagaagggagt
tttttactatcatgaagaaatgaagagaacacaatacgagcaccctggtatatcaaatcc
aatttttcgaacggaatctgtaaatgttgctagccgctcccaagtggatttgaatgccaa
tctgcacattatagaggagaaagaactgccaccctggctactgatgtatgctcaatcgga
ttcgtcgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAACAGGGCACACGGGAACTCAGC 510 73 141 Antisense
TTGAAAAAAGGCTGGCTTCCCCTCA 154 1 170 Antisense
AGATTCCAATCGCTTCAAACTCTTC 560 65 202 Antisense
ATATCGATCTTCTTGTGACTGTTCA 163 21 255 Antisense
GAAAACCAGCCATACTACGTTGATC 34 355 325 Antisense
TGATCATGCCAACCGGCGAACTCAT 458 565 345 Antisense
ACTCATTGGGTTCATCCTTTTGTTC 173 101 364 Antisense
AATCTGTAAATGTTGCTAGCCGCTC 307 169 515 Antisense
CTAGCCGCTCCCAAGTGGATTTGAA 41 225 530 Antisense
CACCCTGGCTACTGATGTATGCTCA 318 201 590 Antisense
GTATGCTCAATCGGATTCGTCGCTG 30 455 606 Antisense
Sequence Source Affymetrix Proprietary Database