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[185560_at]

Description Y43F8B.11 /REP_DB=WormBase Gene ID /WP=CE21895 /TR=Q9XWY1 /GB=CAA21505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 289
1 2 3 4 range
A 221.1
(-1.8)
A 		178.9
(-2.7)
A 		165.1
(-3)
A 		435.4
(3)
M 		270
B 218.3
(-1.5)
A 		149.7
(-3)
A 		187.9
(-2.2)
A 		433.2
(3)
P 		284
C 226.5
(-0.9)
A 		180.6
(-2.1)
A 		146.7
(-3)
A 		375.7
(3)
P 		229
avr 222
(-1.7) 		169.7
(-2.9) 		166.6
(-3) 		414.8
(3) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 279
1 2 3 4 5 6 range
A 265.6
(-0.1)
A 		238.7
(-0.7)
A 		301.8
(0.7)
M 		410
(3)
A 		131.3
(-3)
A 		228
(-0.9)
A 		279
B 232.7
(-3)
A 		306.4
(0.6)
A 		331.4
(1.9)
A 		284.3
(-0.5)
A 		354.8
(3)
M 		236.2
(-2.8)
A 		122
C 238.8
(-1.6)
A 		307.3
(3)
A 		217.3
(-3)
A 		230.2
(-2.1)
A 		298.2
(2.4)
A 		263.3
(0.1)
A 		90
avr 245.7
(-2.7) 		284.1
(0.8) 		283.5
(0.7) 		308.2
(3) 		261.4
(-1.3) 		242.5
(-3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 80.5
(3)
A 		38.8
(-3)
A 		43.2
(-2.4)
A 		63.7
(0.6)
M 		42
B 69.6
(0.5)
A 		37
(-3)
A 		43.5
(-2.3)
A 		92.3
(3)
P 		55
C 75
(3)
A 		51.9
(-2.8)
A 		51.1
(-3)
A 		63.4
(0.1)
P 		24
avr 75
(3) 		42.6
(-3) 		45.9
(-2.4) 		73.1
(2.6) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 49
(-2.1)
A 		84.9
(1.2)
A 		65.7
(-0.6)
M 		104
(3)
A 		39.6
(-3)
A 		55.5
(-1.5)
A 		64
B 81
(-2.5)
A 		102
(-0.7)
A 		80.5
(-2.5)
A 		75.3
(-3)
A 		144.1
(3)
M 		88.1
(-1.9)
A 		69
C 88.5
(2)
A 		93.8
(2.7)
A 		55.3
(-1.9)
A 		46.3
(-3)
A 		96.5
(3)
A 		88.2
(2)
A 		50
avr 72.8
(-1.7) 		93.6
(3) 		67.2
(-3) 		75.2
(-1.2) 		93.4
(3) 		77.3
(-0.7) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12867
Sequence Type Exemplar sequence
Representative Public ID Y43F8B.11 NCBI
Target Description Y43F8B.11 /REP_DB=WormBase Gene ID /WP=CE21895 /TR=Q9XWY1 /GB=CAA21505.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075387(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075387 NCBI Caenorhabditis elegans Y43F8B.11 (Y43F8B.11) mRNA, complete cds. 11/11 None
GENEFINDER00000027197 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19473267:19475045:1 11/11 None
Y43F8B.11 ENSEMBL cdna:known chromosome:CEL140:V:19473267:19475045:1 gene:Y43F8B.11 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027172 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19473266-19475045(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43F8B.11
Entrez Gene 189874 Entrez gene
SwissProt Q9XWY1 EMBL-EBI
WormBase CE21895 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21505 Hypothetical protein Y43F8B.11 [Caenorhabditis elegans] ref|NP_507788.1| Y43F8B.11 [Caenorhabditis elegans] 1.0E-100
blast CAE60773 Hypothetical protein CBG04462 [Caenorhabditis briggsae] 4.0E-64
blast NP_871872 K09H9.5b [Caenorhabditis elegans] gb|AAO12406.1| Hypothetical protein K09H9.5b [Caenorhabditis elegans] 2.0E-19
Sequence
Target Sequence 
>C. ELEGANS:185560_AT
tttagtccaaatttcatcagccacgacatgcacaacaacggatcagattaaattccttca
gtgcaaagggagcatgattaaaattcaggatttgctgaaactttacgcaccgtacaccga
gacacccgttcctggctcggtttttaagcaaatttcaaagttatgtgatgttgctgtgaa
atgtgtagatcaaatcacgtgtgctgaggccagaaaaggggtctcaatgatggaatttgc
ctgtgagggtattgaaatgagctccggaccctttggagattgtttggcgaaggttcagca
aaatccaccggattctgaaaaatatccatgtgctgagctttttgtgaagaattctcttga
cacaatatccaaaggctgtcagcttttcacccacaactccgaatgcgtcgtcaccgttgc
caaggacctgtgcggagcccaggcagcggattcatacaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTAGTCCAAATTTCATCAGCCACG 592 673 48 Antisense
TTCATCAGCCACGACATGCACAACA 693 687 60 Antisense
ATCAGATTAAATTCCTTCAGTGCAA 415 29 89 Antisense
TGAAACTTTACGCACCGTACACCGA 387 571 143 Antisense
GATCAAATCACGTGTGCTGAGGCCA 86 421 235 Antisense
AAATGAGCTCCGGACCCTTTGGAGA 656 119 302 Antisense
GACCCTTTGGAGATTGTTTGGCGAA 593 379 314 Antisense
GAAGGTTCAGCAAAATCCACCGGAT 139 335 336 Antisense
CAAAGGCTGTCAGCTTTTCACCCAC 340 193 417 Antisense
TCACCGTTGCCAAGGACCTGTGCGG 195 625 458 Antisense
AGCCCAGGCAGCGGATTCATACAAG 2 83 483 Antisense
Sequence Source Affymetrix Proprietary Database