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[185559_at] 7TM chemoreceptor, srx family

Description C14C11.5 /REP_DB=WormBase Gene ID /WP=CE06824 /TR=Q17975 /GB=AAA96103.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 30      6grp_cgc > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 22.3
(3)
A 		21.7
(2.8)
A 		2.6
(-3)
A 		20.3
(2.4)
A 		20
B 12.7
(3)
A 		4.1
(-3)
A 		4.3
(-2.9)
A 		9.8
(1)
A 		9
C 19.1
(3)
A 		3.6
(-2.8)
A 		3.1
(-3)
A 		5.2
(-2.2)
A 		16
avr 18
(3) 		9.8
(-0.3) 		3.3
(-3) 		11.8
(0.5) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 65
(3)
A 		30.6
(-0.3)
A 		2.6
(-3)
A 		30.9
(-0.3)
A 		49
(1.5)
A 		4.9
(-2.8)
A 		62
B 7
(-3)
A 		23.5
(1.8)
A 		20.4
(0.9)
A 		27.8
(3)
A 		14.9
(-0.7)
A 		13
(-1.3)
A 		21
C 2.7
(-3)
A 		46.6
(3)
A 		9.1
(-2.1)
A 		2.7
(-3)
A 		12.9
(-1.6)
A 		12.2
(-1.7)
A 		44
avr 24.9
(0.8) 		33.6
(3) 		10.7
(-2.8) 		20.5
(-0.3) 		25.6
(1) 		10
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 8.1
(3)
A 		4.7
(0.2)
A 		0.7
(-3)
A 		3
(-1.1)
A 		7
B 4.1
(3)
A 		1
(-3)
A 		1
(-3)
A 		2.1
(-0.9)
A 		3
C 6.3
(3)
A 		1
(-2.9)
A 		1.1
(-2.8)
A 		0.9
(-3)
A 		5
avr 6.2
(3) 		2.2
(-1.5) 		0.9
(-3) 		2
(-1.8) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 12
(1.8)
A 		10.9
(1.4)
A 		0.6
(-3)
A 		7.8
(0)
A 		14.8
(3)
A 		1.2
(-2.7)
A 		14
B 2.4
(-3)
A 		7.8
(3)
A 		5
(-0.1)
A 		7.4
(2.6)
A 		6
(1)
A 		4.8
(-0.3)
A 		5
C 1
(-2.8)
A 		14.2
(3)
A 		2.3
(-2.2)
A 		0.5
(-3)
A 		4.2
(-1.4)
A 		4.1
(-1.4)
A 		14
avr 5.1
(-1.2) 		11
(3) 		2.6
(-3) 		5.2
(-1.1) 		8.3
(1.1) 		3.4
(-2.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185559_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11427
Sequence Type Exemplar sequence
Representative Public ID C14C11.5 NCBI
Target Description C14C11.5 /REP_DB=WormBase Gene ID /WP=CE06824 /TR=Q17975 /GB=AAA96103.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072086(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072086 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-117) (srx-117) mRNA, complete cds. 11/11 None
GENEFINDER00000024136 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5647082:5653470:1 11/11 None
C14C11.5 ENSEMBL cdna:known chromosome:CEL140:V:5647082:5648826:1 gene:C14C11.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000024119 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5647081-5648826(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srx family
Gene Symbol srx-117
Ensembl C14C11.5
Entrez Gene 182611 Entrez gene
SwissProt Q17975 EMBL-EBI
WormBase CE06824 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96104 Hypothetical protein C14C11.4 [Caenorhabditis elegans] ref|NP_504488.1| C14C11.4 [Caenorhabditis elegans] 0.0
blast CAE64596 Hypothetical protein CBG09351 [Caenorhabditis briggsae] 1.0E-178
blast AAA96103 Serpentine receptor, class x protein 117 [Caenorhabditis elegans] ref|NP_504487.1| Serpentine Receptor, class X family member (srx-117) [Caenorhabditis elegans] 1.0E-163
blast AAA96103 Serpentine receptor, class x protein 117 [Caenorhabditis elegans] ref|NP_504487.1| Serpentine Receptor, class X family member (srx-117) [Caenorhabditis elegans] 1.0E-158
blast CAE64597 Hypothetical protein CBG09352 [Caenorhabditis briggsae] 1.0E-143
blast CAA98965 Hypothetical protein W05B10.5 [Caenorhabditis elegans] ref|NP_506167.1| Serpentine Receptor, class X family member (srx-116) [Caenorhabditis elegans] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 1.5E-7
Pfam IPR003366 EMBL-EBI Protein of unknown function DUF141 7.0E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504487.1 7 22-44,65-87,97-119,132-154,185-207,228-250,255-277
C14C11.5 7 22-44,65-87,97-119,132-154,185-207,228-250,255-277
GENEFINDER00000024136 8 22-44,65-87,97-119,132-154,185-207,228-250,255-277,754-776
Sequence
Target Sequence 
>C. ELEGANS:185559_AT
aatcgagttttagcagtcttcttcccgcatctataccacaaaacttatagggttgcaccg
agtaatgtaggaatcatgatatgtctttttctgtcatttcttctatttgcggcattcttt
ccggagggttgtcattatttgtataacttgaaagatattggatggttacctgaacaaagc
ctatgcacttctattcgtcgttcaatatttattgtatccatgattattattgtgattgtt
acaagtgtctgcgggtttttactgtttttcagactgattgcagacgcgaatgcaatgtca
actgtacaatcaactagtcgacgctccaaaaatcagaagatattatttcaaactttgact
caaaatatgctcattctagtggacactctcaacactacagtaacctacaaactatttcca
gtgttatttttccaatttctcaccctatctttctcgatggtttttctacgggcactggaa
ggatttataatgttcaaaatgaatgaacgaatcgacaaaggagttcgttcattactcggg
ttga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCGAGTTTTAGCAGTCTTCTTCC 553 167 355 Antisense
TCTGTCATTTCTTCTATTTGCGGCA 200 609 444 Antisense
ATTTGCGGCATTCTTTCCGGAGGGT 211 5 459 Antisense
CAAAGCCTATGCACTTCTATTCGTC 179 193 529 Antisense
ACAAGTGTCTGCGGGTTTTTACTGT 40 113 595 Antisense
GTACAATCAACTAGTCGACGCTCCA 455 461 658 Antisense
ATATGCTCATTCTAGTGGACACTCT 522 21 719 Antisense
GGACACTCTCAACACTACAGTAACC 608 523 735 Antisense
TCACCCTATCTTTCTCGATGGTTTT 4 627 794 Antisense
ATGGTTTTTCTACGGGCACTGGAAG 106 49 811 Antisense
GGAGTTCGTTCATTACTCGGGTTGA 665 515 874 Antisense
Sequence Source Affymetrix Proprietary Database