[Home] | [Total List]

[185558_at]

Description T01B10.5 /REP_DB=WormBase Gene ID /WP=CE12890 /TR=O02152 /GB=AAB52860.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 29      6grp_high1_10_10 > 09      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 80      6grp_total > 91      4grp_total > 21      6grp_highest_sub > 04_05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 183
(2.4)
P 		93
(-2)
P 		71.6
(-3)
P 		194.3
(3)
P 		123
B 127.5
(-0.1)
P 		107
(-1.2)
P 		73.7
(-3)
P 		183.9
(3)
P 		110
C 194
(1.1)
P 		108
(-1.6)
P 		64.9
(-3)
P 		252.1
(3)
P 		187
avr 168.2
(1.2) 		102.7
(-1.6) 		70.1
(-3) 		210.1
(3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 322.7
(3)
P 		129.8
(-3)
P 		217
(-0.3)
P 		219.1
(-0.2)
P 		271.4
(1.4)
P 		202.3
(-0.7)
P 		193
B 222.3
(-0.1)
P 		197.7
(-1.4)
P 		166.2
(-3)
P 		262.8
(2)
P 		282.7
(3)
P 		204.4
(-1)
P 		117
C 205.6
(-1.1)
P 		246.8
(1.1)
P 		168.7
(-3)
P 		282.9
(3)
P 		213.5
(-0.6)
P 		195.3
(-1.6)
P 		114
avr 250.2
(2.5) 		191.4
(-2.4) 		184
(-3) 		254.9
(2.9) 		255.9
(3) 		200.7
(-1.6) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 66.6
(3)
P 		20.2
(-2.8)
P 		18.7
(-3)
P 		28.4
(-1.8)
P 		48
B 40.7
(3)
P 		26.4
(-0.6)
P 		17.1
(-3)
P 		39.2
(2.6)
P 		24
C 64.2
(3)
P 		31
(-1.8)
P 		22.6
(-3)
P 		42.5
(-0.1)
P 		42
avr 57.2
(3) 		25.9
(-2) 		19.5
(-3) 		36.7
(-0.3) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 59.5
(-0.8)
P 		46.2
(-3)
P 		47.3
(-2.8)
P 		55.6
(-1.4)
P 		81.9
(3)
P 		49.3
(-2.5)
P 		36
B 77.4
(-0)
P 		65.8
(-1)
P 		40.4
(-3)
P 		69.6
(-0.6)
P 		114.9
(3)
P 		76.2
(-0.1)
P 		75
C 76.2
(3)
P 		75.3
(2.8)
P 		42.9
(-3)
P 		56.9
(-0.5)
P 		69.1
(1.7)
P 		65.4
(1.1)
P 		33
avr 71
(0.7) 		62.4
(-0.5) 		43.5
(-3) 		60.7
(-0.7) 		88.6
(3) 		63.6
(-0.3) 		45
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185558_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16888
Sequence Type Exemplar sequence
Representative Public ID T01B10.5 NCBI
Target Description T01B10.5 /REP_DB=WormBase Gene ID /WP=CE12890 /TR=O02152 /GB=AAB52860.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077039(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077039 NCBI Caenorhabditis elegans T01B10.5 (T01B10.5) mRNA, complete cds. 10/11 None
GENEFINDER00000012640 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8494072:8497896:1 10/11 None
T01B10.5 ENSEMBL cdna:known chromosome:CEL140:X:8495259:8497896:1 gene:T01B10.5 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000012634 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8495257-8497895(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T01B10.5
Entrez Gene 187935 Entrez gene
SwissProt O02152 EMBL-EBI
WormBase CE35754 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52860 Hypothetical protein T01B10.5 [Caenorhabditis elegans] ref|NP_509440.2| T01B10.5 [Caenorhabditis elegans] 1.0E-105
blast CAE74909 Hypothetical protein CBG22786 [Caenorhabditis briggsae] 1.0E-59
blast CAE74909 Hypothetical protein CBG22786 [Caenorhabditis briggsae] 2.0E-59
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509440.2 4 16-38,58-77,90-112,127-149
T01B10.5 4 16-38,58-77,90-112,127-149
GENEFINDER00000012640 6 13-32,37-59,72-94,114-133,146-168,183-205
Sequence
Target Sequence 
>C. ELEGANS:185558_AT
tgaaacgctcatcgagttcctggttattatcccaactgtagtgttcacgtttttaaatgt
ttttgaatatgatgaaacccgctacaaaacatatcatcctgaactatctggtattgttgg
ctttcatttcttgttgccaatttttgtatatcagatcctctggcttctttcaaacattgg
gtcagctgtgacagtgcataccaacactccttacattttcttttttacattattagttcc
gatttttgggctcatagtgagcattgtaattcttgtgccatcagttgagcatgtcataac
tcaaaatttcgatgtgaacgggtattttatgggatttgtatgcacacttttcgtatttgt
tattgctatgattctgttcacgatctctcgatttgcaacacttcggaagttgatgaagaa
aaatgttgtacaaaacacagctgaaaaatcggcagaagatcctcaacaagaacattgtgc
tcctgcactaaagcgtatgaaagatcccgatgaaatcagcaccacgttcagtcgtcggtc
gacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAACGCTCATCGAGTTCCTGGTT 228 573 174 Antisense
GTTCCTGGTTATTATCCCAACTGTA 303 441 189 Antisense
AACCCGCTACAAAACATATCATCCT 702 145 249 Antisense
GGTATTGTTGGCTTTCATTTCTTGT 534 505 283 Antisense
TATCAGATCCTCTGGCTTCTTTCAA 663 659 322 Antisense
GTGACAGTGCATACCAACACTCCTT 183 481 361 Antisense
TAGTTCCGATTTTTGGGCTCATAGT 204 643 407 Antisense
GCTATGATTCTGTTCACGATCTCTC 131 303 538 Antisense
ACGATCTCTCGATTTGCAACACTTC 623 93 553 Antisense
TGTGCTCCTGCACTAAAGCGTATGA 337 557 649 Antisense
CCACGTTCAGTCGTCGGTCGACAAT 667 273 695 Antisense
Sequence Source Affymetrix Proprietary Database