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[185557_s_at]

Description C02A12.4 /REP_DB=WormBase Gene ID /WP=CE07828 /TR=O16202 /GB=AAB65267.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 38      6grp_high1_10_10 > 83      6grp_highest_nonorm > 29      6grp_total > 74      4grp_total > 60      6grp_highest_sub > 04      6grp_cgc > 76      6grp_high1_sub > 04      6grp_cgc_sub > 03_04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8086
1 2 3 4 range
A 6617.4
(1.9)
P 		7196
(2.3)
P 		8090.3
(3)
P 		247.7
(-3)
A 		7843
B 6473.2
(1.7)
P 		8264
(3)
P 		8029.2
(2.8)
P 		177.7
(-3)
A 		8086
C 6576.5
(2)
P 		7826.5
(3)
P 		7337.5
(2.6)
P 		278.8
(-3)
A 		7548
avr 6555.7
(2) 		7762.2
(3) 		7819
(3) 		234.7
(-3) 		7584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10458
1 2 3 4 5 6 range
A 6316
(-3)
P 		8497.2
(-1.7)
P 		13126.3
(0.9)
P 		16773.5
(3)
P 		12649.5
(0.6)
P 		13515
(1.1)
P 		10458
B 6907.2
(-3)
P 		9310.7
(-1.1)
P 		13156.5
(1.8)
P 		14696.8
(3)
P 		13184.2
(1.8)
P 		11696
(0.7)
P 		7790
C 7060.5
(-3)
P 		8730.3
(-1.7)
P 		13672.1
(2.3)
P 		14552.9
(3)
P 		14236.7
(2.7)
P 		11926.1
(0.9)
P 		7492
avr 6761.2
(-3) 		8846.1
(-1.5) 		13318.3
(1.6) 		15341.1
(3) 		13356.8
(1.6) 		12379
(0.9) 		8580
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2521
1 2 3 4 range
A 2409.4
(3)
P 		1562.1
(0.9)
P 		2115
(2.3)
P 		36.3
(-3)
A 		2373
B 2064.2
(3)
P 		2041
(2.9)
P 		1860.6
(2.4)
P 		37.9
(-3)
A 		2026
C 2177
(2.1)
P 		2250.2
(2.3)
P 		2557.4
(3)
P 		47
(-3)
A 		2510
avr 2216.9
(3) 		1951.1
(2.3) 		2177.7
(2.9) 		40.4
(-3) 		2177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4192
1 2 3 4 5 6 range
A 1164.3
(-3)
P 		3022
(0.6)
P 		2858.6
(0.3)
P 		4254.2
(3)
P 		3817.1
(2.2)
P 		3290.5
(1.1)
P 		3090
B 2403.4
(-3)
P 		3099.2
(-1.6)
P 		3194.8
(-1.4)
P 		3892.7
(0)
P 		5356.6
(3)
P 		4361.4
(1)
P 		2953
C 2617
(-3)
P 		2663.9
(-2.9)
P 		3479.8
(-0.4)
P 		2926.6
(-2.1)
P 		4606.8
(3)
P 		3992.3
(1.1)
P 		1990
avr 2061.6
(-3) 		2928.4
(-0.9) 		3177.7
(-0.4) 		3691.2
(0.9) 		4593.5
(3) 		3881.4
(1.3) 		2532
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185557_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15298
Sequence Type Exemplar sequence
Representative Public ID C02A12.4 NCBI
Target Description C02A12.4 /REP_DB=WormBase Gene ID /WP=CE07828 /TR=O16202 /GB=AAB65267.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071571(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071571 NCBI Caenorhabditis elegans LYSozyme family member (lys-7) (lys-7) mRNA, complete cds. 11/11 None
SNAP00000023219 ENSEMBL cdna:SNAP chromosome:CEL140:V:3481307:3482425:-1 11/11 None
GENEFINDER00000023227 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:3479563:3482425:-1 11/11 None
C02A12.4.1 ENSEMBL cdna:known chromosome:CEL140:V:3481262:3482426:-1 gene:C02A12.4 11/11 None
C02A12.4.2 ENSEMBL cdna:known chromosome:CEL140:V:3481307:3482428:-1 gene:C02A12.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3481306-3482425(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lys-7
Ensembl C02A12.4
Entrez Gene 178772 Entrez gene
SwissProt O16202 EMBL-EBI
WormBase CE07828 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65267 Lysozyme protein 7 [Caenorhabditis elegans] ref|NP_503972.1| LYSozyme family member (lys-7) [Caenorhabditis elegans] 1.0E-150
blast AAB65267 Lysozyme protein 7 [Caenorhabditis elegans] ref|NP_503972.1| LYSozyme family member (lys-7) [Caenorhabditis elegans] 1.0E-148
blast AAB93455 Lysozyme protein 8 [Caenorhabditis elegans] ref|NP_495083.1| LYSozyme family member (lys-8) [Caenorhabditis elegans] 1.0E-116
blast AAB93455 Lysozyme protein 8 [Caenorhabditis elegans] ref|NP_495083.1| LYSozyme family member (lys-8) [Caenorhabditis elegans] 1.0E-115
Protein Domains
Database ID Description E-Value
Pfam IPR002892 EMBL-EBI Protein of unknown function DUF40 3.0E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000023227 1 288-310
Sequence
Target Sequence 
>C. ELEGANS:185557_S_AT
agttttcgttcgtgcatacaacccagcaggacaaggatcctttgacaccagctcttgcgt
cactattcaaaatgcttataaagctggactcggaattgagatttatatgactccacagcc
cgtttcaaacaagcaaggctaccaacagttggatgagatcatccagggattgactgcaag
agcgatcacagtcagagcaatctggattcaggtcacttcgccaactaactggccaaataa
cgcgaatagcaatattaacttcatcaacagtattgtctccagagccagacaatccggatt
aactgtcggaatctacacctcctactacgactggaatcagatcacgaccggatggagcaa
cattggaaatgatgttctcctctggtattggaatgtgtacagcggtggagtcactggaga
aactcctgccaacttcaatgacttccgtaaatttggatgctggacagctccatctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTTCGTTCGTGCATACAACCCA 661 61 246 Antisense
GGACAAGGATCCTTTGACACCAGCT 112 527 274 Antisense
CAGCTCTTGCGTCACTATTCAAAAT 515 203 294 Antisense
GAGATTTATATGACTCCACAGCCCG 14 397 343 Antisense
TCCACAGCCCGTTTCAAACAAGCAA 278 587 357 Antisense
GCAATCTGGATTCAGGTCACTTCGC 627 321 442 Antisense
GTCACTTCGCCAACTAACTGGCCAA 578 463 457 Antisense
TCAACAGTATTGTCTCCAGAGCCAG 196 631 509 Antisense
GAATCAGATCACGACCGGATGGAGC 23 329 579 Antisense
AAACTCCTGCCAACTTCAATGACTT 237 127 665 Antisense
TTGGATGCTGGACAGCTCCATCTGT 371 709 698 Antisense
Sequence Source Affymetrix Proprietary Database