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[185554_s_at]

Description Y39B6B.GG /REP_DB=WormBase Gene ID /WP=CE21682 /TR=Q9NES7 /GB=CAB60938.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 15      6grp_total > 05      4grp_total > 54      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8471
1 2 3 4 range
A 8113.1
(3)
P 		2279.8
(-1.3)
P 		3202.8
(-0.6)
P 		41.1
(-3)
A 		8072
B 8486
(3)
P 		1821.2
(-1.7)
P 		3010.4
(-0.9)
P 		15.2
(-3)
A 		8471
C 7379.2
(3)
P 		1840.3
(-1.5)
P 		3174.8
(-0.4)
P 		63.3
(-3)
A 		7316
avr 7992.8
(3) 		1980.4
(-1.5) 		3129.3
(-0.7) 		39.9
(-3) 		7953

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8652
1 2 3 4 5 6 range
A 7757.1
(3)
P 		7575.3
(2.9)
P 		1156
(-2.2)
P 		949.8
(-2.4)
P 		1737.5
(-1.8)
P 		198.2
(-3)
P 		7559
B 7695.3
(3)
P 		6393.8
(2)
P 		1416.4
(-2)
P 		1047.2
(-2.3)
P 		1497.3
(-1.9)
P 		176.7
(-3)
P 		7519
C 8757.2
(3)
P 		5475
(0.7)
P 		1504.2
(-2)
P 		806.4
(-2.5)
P 		2347.1
(-1.4)
P 		105
(-3)
A 		8652
avr 8069.9
(3) 		6481.4
(1.8) 		1358.9
(-2.1) 		934.5
(-2.4) 		1860.6
(-1.7) 		160
(-3) 		7910
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2951
1 2 3 4 range
A 2954
(3)
P 		494.9
(-2)
P 		837.3
(-1.3)
P 		6
(-3)
A 		2948
B 2706.1
(3)
P 		449.8
(-2)
P 		697.6
(-1.5)
P 		3.2
(-3)
A 		2703
C 2442.7
(3)
P 		529.1
(-1.7)
P 		1106.5
(-0.3)
P 		10.7
(-3)
A 		2432
avr 2700.9
(3) 		491.3
(-1.9) 		880.5
(-1.1) 		6.6
(-3) 		2694

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3211
1 2 3 4 5 6 range
A 1430
(0.1)
P 		2694.2
(3)
P 		251.7
(-2.5)
P 		240.9
(-2.6)
P 		524.3
(-1.9)
P 		48.3
(-3)
P 		2646
B 2677.6
(3)
P 		2128.2
(1.7)
P 		343.9
(-2.4)
P 		277.4
(-2.5)
P 		608.4
(-1.8)
P 		65.9
(-3)
P 		2612
C 3245.9
(3)
P 		1670.6
(0.1)
P 		382.8
(-2.4)
P 		162.2
(-2.8)
P 		759.5
(-1.6)
P 		35.1
(-3)
A 		3211
avr 2451.2
(3) 		2164.3
(2.3) 		326.1
(-2.3) 		226.8
(-2.6) 		630.7
(-1.5) 		49.8
(-3) 		2401
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185554_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19439
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.GG NCBI
Target Description Y39B6B.GG /REP_DB=WormBase Gene ID /WP=CE21682 /TR=Q9NES7 /GB=CAB60938.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171608(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171608 NCBI Caenorhabditis elegans Y39B6A.1 (Y39B6A.1) mRNA, complete cds. 11/11 None
GENEFINDER00000030691 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19203755:19206170:-1 11/11 None
Y39B6A.1.2 ENSEMBL cdna:known chromosome:CEL140:V:19203598:19206180:-1 gene:Y39B6A.1 11/11 None
Y39B6A.1.1 ENSEMBL cdna:known chromosome:CEL140:V:19203598:19206182:-1 gene:Y39B6A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19203754-19206170(-) 94.25 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.1
Entrez Gene 180264 Entrez gene
SwissProt Q9NES7 EMBL-EBI
WormBase CE21682 Wormbase
Functional Annotations
Ortholog
ID Title Organism
HG-U133_PLUS_2:215704_AT filaggrin hs
HG-U133A:215704_AT filaggrin hs
HG-U133A_2:215704_AT filaggrin hs
HG-U95AV2:31542_AT filaggrin hs
HU35KSUBA:M60502_AT filaggrin hs
HUGENEFL:M60503_AT filaggrin hs
U133_X3P:HS.73995.0.S1_3P_AT filaggrin hs
MOUSE430A_2:1427268_AT similar to Acidic ribosomal phosphoprotein P0 mm
MOE430A:1427268_AT similar to Acidic ribosomal phosphoprotein P0 mm
MOUSE430_2:1427268_AT similar to Acidic ribosomal phosphoprotein P0 mm
MU11KSUBB:MSA.1652.0_AT similar to Acidic ribosomal phosphoprotein P0 mm
MG-U74AV2:100420_AT similar to Acidic ribosomal phosphoprotein P0 mm
MG-U74AV2:161981_R_AT similar to Acidic ribosomal phosphoprotein P0 mm
Protein Similarities
Method ID Description E-Value
blast CAC51077 Hypothetical protein Y39B6A.1 [Caenorhabditis elegans] ref|NP_741698.1| Y39B6A.1 [Caenorhabditis elegans] 2.0E-29
blast CAE73149 Hypothetical protein CBG20540 [Caenorhabditis briggsae] 1.0E-25
Sequence
Target Sequence 
>C. ELEGANS:185554_S_AT
cacaccatggacaccacggggaacatgggacccaccacggacaccacggatcccatcact
ccccagctcaccacggacatcatggggagcaccaccatgctccagctcatcacggacacc
acggacaccacggatctcacggagttcatcacggacaccacgaatcccatgggcatggtc
accacgcaccggctcaccacggacaccatggggagcatggagttcatcacggacatcatg
gagcaggctacggagctcaccatggacaccacggagcccaccaccaccacgccccacacc
atgagcatcacgaacaccatggagatcatcaccacggatctcacggagtccatcacggac
accacggaacccaccactccctagcacatcacggacatcacggaggtcatgggaccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACACCATGGACACCACGGGGAACA 216 161 1622 Antisense
AGCTCACCACGGACATCATGGGGAG 552 79 1686 Antisense
ACACCACGGATCTCACGGAGTTCAT 180 109 1746 Antisense
AGTTCATCACGGACACCACGAATCC 111 65 1764 Antisense
GAATCCCATGGGCATGGTCACCACG 70 329 1783 Antisense
TCACCACGGACACCATGGGGAGCAT 593 623 1815 Antisense
TGGAGCAGGCTACGGAGCTCACCAT 395 549 1860 Antisense
ACACCATGAGCATCACGAACACCAT 582 109 1917 Antisense
TCACGGAGTCCATCACGGACACCAC 655 625 1962 Antisense
TCCCTAGCACATCACGGACATCACG 353 595 1999 Antisense
GGACATCACGGAGGTCATGGGACCC 676 525 2014 Antisense
Sequence Source Affymetrix Proprietary Database