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[185553_at]

Description C24H10.1 /REP_DB=WormBase Gene ID /WP=CE04066 /TR=Q18135 /GB=AAA81453.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 42      4grp_high_8_8 > 49      6grp_highest_nonorm > 70      6grp_total > 22      4grp_total > 54      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 302
1 2 3 4 range
A 397.5
(3)
P 		201
(-1.8)
P 		302.4
(0.7)
P 		154.4
(-3)
P 		243
B 456.5
(3)
P 		256
(-1.3)
P 		230.7
(-1.8)
P 		176.7
(-3)
P 		280
C 377.7
(3)
P 		287.8
(0.5)
P 		248.2
(-0.7)
P 		165.4
(-3)
P 		212
avr 410.6
(3) 		248.3
(-1) 		260.4
(-0.7) 		165.5
(-3) 		245

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 300
1 2 3 4 5 6 range
A 324.9
(1.7)
P 		248.8
(-0.2)
P 		374.3
(3)
P 		341
(2.1)
P 		267.1
(0.3)
P 		139.3
(-3)
P 		235
B 279.2
(0.3)
P 		384.8
(3)
P 		350.8
(2.1)
P 		283.9
(0.5)
P 		233.7
(-0.8)
P 		146.6
(-3)
P 		238
C 409.7
(2.5)
P 		433.2
(3)
P 		255.7
(-0.6)
P 		389.6
(2.1)
P 		149.4
(-2.7)
P 		133.4
(-3)
P 		300
avr 337.9
(2.5) 		355.6
(3) 		326.9
(2.2) 		338.2
(2.5) 		216.7
(-0.9) 		139.8
(-3) 		216
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 144.7
(3)
P 		43.6
(-2)
P 		79
(-0.2)
P 		22.6
(-3)
P 		122
B 145.6
(3)
P 		63.2
(-1.6)
P 		53.5
(-2.1)
P 		37.7
(-3)
P 		108
C 125
(3)
P 		82.7
(0.4)
P 		86.5
(0.6)
P 		27.9
(-3)
P 		97
avr 138.4
(3) 		63.2
(-1.1) 		73
(-0.6) 		29.4
(-3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 118
1 2 3 4 5 6 range
A 59.9
(-0.1)
P 		88.5
(3)
P 		81.5
(2.2)
P 		86.5
(2.8)
P 		80.6
(2.1)
P 		33.9
(-3)
P 		55
B 97.1
(0.5)
P 		128.1
(3)
P 		85.2
(-0.5)
P 		75.2
(-1.3)
P 		94.9
(0.3)
P 		54.7
(-3)
P 		73
C 151.9
(3)
P 		132.2
(1.9)
P 		65.1
(-1.9)
P 		78.4
(-1.1)
P 		48.3
(-2.8)
P 		44.7
(-3)
P 		107
avr 103
(1.9) 		116.3
(3) 		77.3
(-0.3) 		80
(-0) 		74.6
(-0.5) 		44.4
(-3) 		72
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17263
Sequence Type Exemplar sequence
Representative Public ID C24H10.1 NCBI
Target Description C24H10.1 /REP_DB=WormBase Gene ID /WP=CE04066 /TR=Q18135 /GB=AAA81453.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076462(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076462 NCBI Caenorhabditis elegans C24H10.1 (C24H10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000004808 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5072004:5074198:1 11/11 None
C24H10.1 ENSEMBL cdna:known chromosome:CEL140:X:5071683:5074198:1 gene:C24H10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000004804 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5071683-5074199(+) 95.27 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H10.1
Entrez Gene 182855 Entrez gene
SwissProt Q18135 EMBL-EBI
WormBase CE04066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA81453 Hypothetical protein C24H10.1 [Caenorhabditis elegans] ref|NP_508863.1| C24H10.1 [Caenorhabditis elegans] 1.0E-131
blast AAA81453 Hypothetical protein C24H10.1 [Caenorhabditis elegans] ref|NP_508863.1| C24H10.1 [Caenorhabditis elegans] 1.0E-116
blast CAE68688 Hypothetical protein CBG14602 [Caenorhabditis briggsae] 1.0E-114
blast A89208 protein K10D6.2b [imported] - Caenorhabditis elegans 5.0E-47
blast A89208 protein K10D6.2b [imported] - Caenorhabditis elegans 6.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR010761 EMBL-EBI Clc-like 1.0E-126
Pfam IPR010761 EMBL-EBI Clc-like 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508863.1 4 35-57,140-162,169-191,217-239
C24H10.1 4 35-57,140-162,169-191,217-239
GENEFINDER00000004808 4 12-34,116-138,145-167,193-215
Sequence
Target Sequence 
>C. ELEGANS:185553_AT
catcacggcttatggcttgactgcacaagacctcaacttcacttggtaaaatctcaaaac
aaagacgatctcccactacattgcacatataaatttgacatatctgcaacgcaaatcatt
gatgaaaatattgaggacattgatcagaatagtgcagctggagaaagcgagcaccatcaa
tttttcggttggcacaaattcaccttaggatttatgctctgcgccattgtcctggccgca
ttatctctcttgtgcggaatttgtgctccttgcagttctgggtttgccgtgttgtatgct
atactagtggcttttacagctttcacagccacgtgtggtgacgctatttttttcttcgcg
gctcatagagtcgatagtcgatttgtgcaaggacttgttggaacttatgagcaagtaata
ggtatggcattctacctccacgtggccggcacagcgatctcctgcttggccctgatcatg
gctgcaatttcggcctactcacttctccaaaacaacgaatctgatcgacatcttccaatg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCACGGCTTATGGCTTGACTGCA 464 211 232 Antisense
ATCTCCCACTACATTGCACATATAA 361 33 299 Antisense
ACCTTAGGATTTATGCTCTGCGCCA 276 87 433 Antisense
GCATTATCTCTCTTGTGCGGAATTT 23 309 469 Antisense
TGCGGAATTTGTGCTCCTTGCAGTT 392 583 484 Antisense
GTTCTGGGTTTGCCGTGTTGTATGC 275 443 506 Antisense
GTGGTGACGCTATTTTTTTCTTCGC 233 489 566 Antisense
TAGGTATGGCATTCTACCTCCACGT 32 655 650 Antisense
CATGGCTGCAATTTCGGCCTACTCA 464 209 708 Antisense
CCTACTCACTTCTCCAAAACAACGA 67 269 725 Antisense
GAATCTGATCGACATCTTCCAATGC 382 329 748 Antisense
Sequence Source Affymetrix Proprietary Database